LOCUS BC136784 3510 bp mRNA linear HUM 11-FEB-2009
DEFINITION Homo sapiens ring finger and CCCH-type zinc finger domains 1, mRNA
(cDNA clone MGC:168397 IMAGE:9020774), complete cds.
ACCESSION BC136784
VERSION BC136784.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3510)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3510)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-MAR-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Ambion
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: LLDM Plate: 671 Row: g Column: 12
single stranded.
FEATURES Location/Qualifiers
source 1..3510
/db_xref="H-InvDB:HIT000500773"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:168397 IMAGE:9020774"
/tissue_type="Testicle, PCR rescued clones"
/clone_lib="NIH_MGC_382"
/lab_host="DH10B"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: ATTCGGGA"
gene 1..3510
/gene="RC3H1"
/gene_synonym="RNF198"
/gene_synonym="ROQUIN"
/gene_synonym="RP5-1198E17.5"
/db_xref="GeneID:149041"
/db_xref="HGNC:HGNC:29434"
/db_xref="MIM:609424"
CDS 42..3446
/gene="RC3H1"
/gene_synonym="RNF198"
/gene_synonym="ROQUIN"
/gene_synonym="RP5-1198E17.5"
/codon_start=1
/product="ring finger and CCCH-type zinc finger domains 1"
/protein_id="AAI36785.1"
/db_xref="GeneID:149041"
/db_xref="HGNC:HGNC:29434"
/db_xref="MIM:609424"
/translation="MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNK
LHRKACPFDQTTINTDIELLPVNSALLQLVGAQVPEQQPITLCSGVEDTKHYEEAKKC
VEELALYLKPLSSARGVGLNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARS
LGERTVTELILQHQNPQQLSSNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALS
RKVLVLFVVQRLEPRFPQASKTSIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTY
EALRREHDSQIVQIAMEAGLRIAPDQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSV
QELTIALQRTGDPANLNRLRPHLELLANIDPSPDAPPPTWEQLENGLVAVRTVVHGLV
DYIQNHSKKGADQQQPPQHSKYKTYMCRDMKQRGGCPRGASCTFAHSQEELEKFRKMN
KRLVPRRPLSASLGQLNEVGLPSAAILPDEGAVDLPSRKPPALPNGIVSTGNTVTQLI
PRGTDPSYDSSLKPGKIDHLSSSAPGSPPDLLESVPKSISALPVNPHSIPPRGPADLP
PMPVTKPLQMVPRGSQLYPAQQTDVYYQDPRGAAPPFEPAPYQQGMYYTPPPQCVSRF
VRPPPSAPEPAPPYLDHYPPYLQERVVNSQYGTQPQQYPPIYPSHYDGRRVYPAPSYT
REEIFRESPIPIEIPPAAVPSYVPESRERYQQIESYYPVAPHPTQIRPSYLREPPYSR
LPPPPQPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSPTLPPTFHPEEFLDEDLKV
AGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDVVAAGSVEMMNVESKGMRDQRLDLQ
RRAAETSDDDLIPFGDRPTVSRFGAISRTSKTIYQGAGPMQAMAPQGAPTKSINISDY
SPYGTHGGWGASPYSPHQNIPSQGHFSERERISMSEVASHGKPLPSAEREQLRLELQQ
LNHQISQQTQLRGLEAVSNRLVLQREANTLAGQSQPPPPPPPKWPGMISSEQLSLELH
QVEREIGKRTRELSMENQCSLDMKSKLNTSKQAENGQPEPQNKVPAEDLTLTFSSDVP
NGSALTQENISLLSNKTSSLNLSEDPEGGGDNNDSQRSGVTPSSAP"
BASE COUNT 999 a 879 c 808 g 824 t
ORIGIN
1 tgtgtgtgtg tttgtgttcg tgaattgtaa ctccagaagc aatgcctgta caagctccac
61 aatggacgga tttcctctcc tgcccaattt gcactcagac tttcgacgaa acaattcgaa
121 agcccatcag tttgggttgt ggccatactg tctgcaagat gtgcctgaat aaactccacc
181 gcaaggcttg cccatttgac cagaccacta tcaatacaga cattgagctc ctccctgtga
241 actcagcatt gctgcagctc gtgggtgctc aggtccctga gcagcagcct attactttgt
301 gtagtggggt tgaagacaca aagcattatg aggaagccaa gaaatgtgta gaagaattag
361 cattgtactt aaaaccgctc agcagtgcta gaggagtggg tctgaacagc actactcaga
421 gtgttctgag tcgcccaatg cagaggaagc ttgtgactct agtccactgt caactagtag
481 aagaagaagg caggattcgt gccatgaggg cagctcgatc tttaggtgaa cgaacagtta
541 cagagctcat tctccagcac cagaatcctc agcaactctc ttccaatctt tgggcagcag
601 taagggctag gggatgccag ttccttggac cagcaatgca ggaggaagct ttaaagttgg
661 ttctgctggc cttagaagat ggttctgctt tgtcaagaaa agtattggtt ctgtttgtgg
721 tgcaaagatt ggagccacgg tttcctcaag cctctaaaac tagcattggg catgttgttc
781 agctccttta tagagcctcc tgtttcaagg tcaccaaacg tgatgaagac tcttctttga
841 tgcagctgaa agaagaattt agaacctatg aagctctgcg gcgagaacat gactcccaga
901 tagtgcagat tgctatggaa gcaggcttac gaattgcacc ggaccagtgg tcctctttgc
961 tttatggaga ccagtctcac aaatctcata tgcagtccat tattgacaag ttgcagactc
1021 cagcctcttt tgcacagagt gttcaggaac taacaattgc tctccagcga actggagacc
1081 cagcaaactt gaaccgacta agaccccatt tggagctgtt agcaaacatt gaccctagtc
1141 cagatgctcc tcctcctact tgggaacagc tggaaaatgg gctggttgct gtgcgtacag
1201 tggtacatgg gctggttgat tatatccaga accacagcaa aaaaggagca gatcagcagc
1261 agcctccaca gcatagcaaa tacaaaacat acatgtgtcg agatatgaag cagagaggag
1321 gatgccctcg tggggccagc tgtacatttg cacactcaca ggaggaactg gaaaaatttc
1381 gtaaaatgaa taagcgcctg gttccgagaa gacccttgag tgcctctttg ggtcaactta
1441 atgaggtggg cctgccttca gcagctatcc ttccagatga aggtgcagtg gatctcccta
1501 gcagaaaacc tcctgctctg ccaaatggaa ttgtatcaac agggaataca gtaacacagc
1561 ttattccgcg agggacagac cccagctatg attctagtct gaaaccagga aaaatagatc
1621 atctgagcag tagtgctcct ggatcccctc ctgacctgct agaatctgtt cctaagagta
1681 tttctgcctt acctgtgaat ccacattcta tacctccaag ggggccagca gatctgcctc
1741 caatgcctgt taccaaacca cttcagatgg tacctcgagg ttctcagtta tatccagcac
1801 aacagacgga tgtttattat caggatcctc gaggagcagc tccgccattt gaaccagcac
1861 cttatcagca gggtatgtat tatactccac caccacaatg tgtgtcccgc tttgtccgac
1921 ctccaccatc tgctcctgaa cctgctcctc cctacttgga tcattatcca ccctacctcc
1981 aagaacgtgt tgtaaactct cagtatggca cacagccaca gcagtaccca cctatatacc
2041 catctcacta tgatggccgt cgagtgtacc ctgctccgtc ttacacaaga gaagagatat
2101 tccgagaaag ccctataccc attgagattc cacctgcagc agtaccatcg tatgtaccag
2161 aatccagaga aagataccaa cagatcgaga gttactatcc agtggctcct catccaactc
2221 agatcagacc ttcgtacctc agagaacctc cttatagccg gcttcctcct cctccccagc
2281 ctcatcctag tctagatgaa ctacatcgcc gacgaaagga aataatggcc cagctagagg
2341 aaagaaaggt tatctctcca cctccttttg caccttcacc aaccttgcct cctacctttc
2401 atccggaaga atttttggat gaagacttga aggtagctgg gaaatacaaa ggaaatgatt
2461 atagccaata ctctccctgg tcatgtgaca ccatcggctc ctacattgga accaaagatg
2521 caaaacccaa agatgttgtg gcagcaggga gtgtggaaat gatgaatgtg gagagtaaag
2581 gaatgaggga ccagcgatta gatcttcaga gaagagcagc agaaaccagt gatgatgacc
2641 tcatcccatt tggagaccga ccaacagtgt ctcggtttgg tgccatctca cgaacttcca
2701 aaactatata tcagggtgct ggtccaatgc aggctatggc acctcaggga gctcctacaa
2761 aatctattaa catttcagat tatagtccat atggaaccca cggtggctgg ggagcttctc
2821 catattcacc tcatcaaaac ataccttctc agggacactt cagtgagagg gagagaatat
2881 ctatgtcaga agtggccagt catggaaaac cccttccatc tgctgagaga gaacagctac
2941 gactagaatt gcagcaattg aaccatcaga ttagccagca gacccagcta cgtggactag
3001 aggctgttag taacaggctg gtgttgcaga gggaggcaaa caccctggca ggccagtcac
3061 agcccccacc accgccacct ccaaaatggc ctgggatgat ctcaagtgag cagttgagct
3121 tggaactgca ccaggtggaa agggaaatcg ggaagagaac acgggaactg agtatggaaa
3181 accagtgttc tctggacatg aaaagcaaac tgaatacaag taaacaagca gaaaatggac
3241 aaccagaacc acaaaacaag gttccggctg aggaccttac attgacattc agcagtgatg
3301 taccaaatgg atcagccttg acacaagaga atatcagcct cctatcaaac aagaccagct
3361 ctctgaacct gtcagaggac cctgagggag gaggggataa taatgactcc cagagatcag
3421 gagttactcc cagttctgct ccttaaaata tgaggagtcc tacttttatc ttctgctcct
3481 aatcagtttg tcgggcatag gggtaggaga
//