LOCUS BC136748 2637 bp mRNA linear HUM 12-MAY-2008
DEFINITION Homo sapiens protocadherin gamma subfamily A, 7, mRNA (cDNA clone
MGC:168361 IMAGE:9020738), complete cds.
ACCESSION BC136748
VERSION BC136748.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2637)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2637)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-MAR-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: LLDM Plate: 671 Row: e Column: 24.
FEATURES Location/Qualifiers
source 1..2637
/db_xref="H-InvDB:HIT000500739"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:168361 IMAGE:9020738"
/tissue_type="Brain, cerebellum, PCR rescued clones"
/clone_lib="NIH_MGC_311"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: CCCTGCCC"
gene 1..2637
/gene="PCDHGA7"
/gene_synonym="PCDH-GAMMA-A7"
/db_xref="GeneID:56108"
/db_xref="HGNC:HGNC:8705"
/db_xref="MIM:606294"
CDS 66..2519
/gene="PCDHGA7"
/gene_synonym="PCDH-GAMMA-A7"
/codon_start=1
/product="protocadherin gamma subfamily A, 7"
/protein_id="AAI36749.1"
/db_xref="GeneID:56108"
/db_xref="HGNC:HGNC:8705"
/db_xref="MIM:606294"
/translation="MAAQPRGGDYRGFFLLSILLGTPWEAWAGRILYSVSEETDKGSF
VGDIAKDLGLEPRELAERGVRIISRGRTQLFALNQRSGSLVTAGRIDREEICAQSARC
LVNFNILMEDKMNLYPIDVEIIDINDNVPRFLTEEINVKIMENTAPGVRFPLSEAGDP
DVGTNSLQSYQLSPNRHFSLAVQSGDDETKYPELVLERVLDREEERVHHLVLTASDGG
DPPRSSTAHIQVTVVDVNDHTPVFSLPQYQVTVPENVPVGTRLLTVHAIDLDEGVNGE
VTYSFRKITPKLPKMFHLNSLTGEISTLEGLDYEETAFYEMEVQAQDGPGSLTKAKVL
ITVLDVNDNAPEVTMTSLSSSIPEDTPLGTVIALFYLQDRDSGKNGEVTCTIPENLPF
KLEKSIDNYYRLVTTKNLDRETLSLYNITLKATDGGTPPLSRETHIFMQVADTNDNPP
TFPHSSYSVYIAENNPRGASIFLVTAQDHDSEDNAQITYSLAEDTIQGAPVSSYVSIN
SDTGVLYALQSFDYEQLRELQLRVTAHDSGDPPLSSNMSLSLFVLDQNDNPPEILYPA
LPTDGSTGMELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYLLLKASEPGLFAVGLYTG
EVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPEVLADLGSLEPSD
GPYNYDLTLYLVVAVATVSCVFLAFVLVLLALRLRRWHKSRLLQASEGGLANVPTSHF
VGMDGVQAFLQTYSHEVSLTADSRKSHLIFPQPNYVDMLISQESCEKNDSLLTSVDFQ
ECKENLPSIQVSPALPLFP"
BASE COUNT 661 a 712 c 675 g 589 t
ORIGIN
1 cggatacacc cgcattctga agcacttccc gagatcggcg cctaagcaag agaagcagga
61 cgactatggc ggctcagccg aggggcgggg actacagagg attcttcctg ctctccatcc
121 tcctggggac cccctgggaa gcctgggcag gacgtattct ctactccgtg tcggaggaga
181 cggacaaagg gtcctttgtg ggagacatcg ccaaggacct ggggctggag ccccgggagc
241 tggcggagcg cggagtccgc atcatctcca gaggtaggac gcagcttttc gccctgaacc
301 agcgcagcgg cagcttggtc actgcgggca ggatagaccg ggaagagatc tgcgctcaga
361 gtgcgcggtg tctggtaaac tttaacatcc tgatggaaga taaaatgaat ctttacccta
421 tagacgtgga aataatagat attaatgaca acgttccaag attcttgacg gaagaaataa
481 atgtaaaaat aatggagaat acagctcctg gggttcggtt tccgttaagc gaggctgggg
541 atccagatgt gggcacgaac tccctccaga gttaccagct cagccccaat cgccacttct
601 ccctggctgt gcaaagtgga gacgatgaaa ctaagtaccc ggaactggtg ctggagcggg
661 tgctggaccg ggaggaagag cgggttcacc acctggtcct cacagcctct gatggcggcg
721 acccgccccg atccagcacc gcccacatcc aggtgacagt ggtggatgtg aatgaccaca
781 cgcctgtctt ctctctgcct cagtaccaag taactgtccc cgagaatgtg ccagtgggta
841 caagactgct cacggtacat gctatcgacc tggacgaggg agtcaatggg gaagtgacat
901 attcttttcg gaaaataact cctaaacttc caaagatgtt tcatctgaac tcgcttacag
961 gagaaatatc aactttagaa ggattagatt atgaagaaac tgccttctat gaaatggagg
1021 ttcaggctca agatggtcct ggtagtctga caaaggcaaa agtactgatc acagttttag
1081 atgtaaatga taatgctcca gaagtgacta tgacgtcttt aagtagctca atccctgaag
1141 acacacctct tgggacagtc attgctcttt tctacctaca agacagagat tctggaaaga
1201 atggtgaggt gacctgcacc attccagaaa acctaccttt taaattagaa aaatcaatag
1261 ataattatta tagattggtc acaaccaaaa acttggaccg ggaaacactc tctttgtata
1321 acatcacact gaaagccaca gatggtggaa ctcctccctt gtccagggaa actcacatat
1381 tcatgcaggt ggcagacacc aacgataacc cacccacctt cccccactca tcctactcag
1441 tctacatcgc tgagaacaac cccagagggg cctccatttt cttagtgact gcacaggacc
1501 acgacagtga ggataatgcc cagatcactt attccttggc cgaagacacc atccaggggg
1561 ctccagtgtc ctcctatgtc tccataaact ctgacactgg agtcctgtac gcgctgcaat
1621 cctttgatta tgagcagttg agagaactac aactaagagt gactgcacat gacagcgggg
1681 acccgcctct cagcagcaac atgtcactga gcctgttcgt gctggaccag aatgacaacc
1741 cgcccgagat cctgtacccg gccctcccca cagatggttc tactggcatg gagctggcac
1801 cccgctccgc agagcccggc tacctggtga ccaaggtggt ggcggtggac aaagattcag
1861 gccagaacgc ctggctgtca tacctcctgc ttaaggccag cgagccagga ctctttgcgg
1921 ttgggctgta cacgggcgag gtgcgcacgg ctcgggccct gctggacaga gatgccctca
1981 agcagagcct cgtggtggcc gtccaggacc acggtcagcc tcctctgtca gccaccgtca
2041 cactcaccgt ggctgtggct gacagcatcc ccgaagtctt ggccgacctg ggcagccttg
2101 agccctccga cggtccttac aactatgacc tcacgttgta cctggtggtg gcggtggcca
2161 cagtctcctg cgtcttccta gccttcgtcc tcgtactgct ggcgctcagg ctgcggcgct
2221 ggcacaagtc acgcctgctg caggcttcag aaggtggctt ggcgaacgtg cccacctcgc
2281 actttgtggg catggacggg gtgcaggctt tcctgcagac ctattcccat gaggtctccc
2341 tcaccgcgga ctctcggaag agtcacctga tcttccccca gcccaactat gtagacatgc
2401 tcatcagcca ggagagctgt gagaaaaatg attctttgct aacatccgta gattttcagg
2461 aatgtaaaga aaacctgcca agtattcagg tgagcccagc ccttccttta tttccatgag
2521 gaatttattt gcatgatatt tctctattat tttgcaaaac aaatgttttg aaaataggga
2581 tttaaaaaaa ctttatagag gtaaaaatga gtttaccagt ttccttcagt ggtgaca
//