LOCUS BC136703 2576 bp mRNA linear HUM 12-MAY-2008 DEFINITION Homo sapiens protocadherin gamma subfamily A, 6, mRNA (cDNA clone MGC:168316 IMAGE:9020693), complete cds. ACCESSION BC136703 VERSION BC136703.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2576) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2576) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2007) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Mike Brownstein, NIMH cDNA Library Preparation: British Columbia Cancer Research Center cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: LLDM Plate: 671 Row: d Column: 3. FEATURES Location/Qualifiers source 1..2576 /db_xref="H-InvDB:HIT000500701" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:168316 IMAGE:9020693" /tissue_type="Brain, cerebellum, PCR rescued clones" /clone_lib="NIH_MGC_311" /note="Vector: pCR4-TOPO with reversed insert; Clone identification sequence tag: ATCCCTCG" gene 1..2576 /gene="PCDHGA6" /gene_synonym="PCDH-GAMMA-A6" /db_xref="GeneID:56109" /db_xref="HGNC:HGNC:8704" /db_xref="MIM:606293" CDS 92..2548 /gene="PCDHGA6" /gene_synonym="PCDH-GAMMA-A6" /codon_start=1 /product="protocadherin gamma subfamily A, 6" /protein_id="AAI36704.1" /db_xref="GeneID:56109" /db_xref="HGNC:HGNC:8704" /db_xref="MIM:606293" /translation="MAPPQRHPQRSEQVLLLTLLGTLWGAAAAQIRYSIPEELEKGSF VGNIVKDLGLEPQELAEHGVRIVSRGRMQLFSLNPRNGSLVTAGRIDREELCAQSPRC LVSFNILVEDKLNLYPVEVEIVDINDNTPRFLKEELEVKILENAAPSSRFPLMEVYDP DVGMNSLQGFKLSGNSHFSVDVQSEAHGPKYPELVLEGTLDREGEAVYRLVLTAMDGG DPVRSSVAQILVTVLDVNDNTPMFTQPVYRVSVPENLPVGTPVLAVTATDQDEGVHGE VTYSFVKITEKISQIFCLNVLTGEISTSANLDYEDSSFYELGVEARDGPGLRDRAKVL ITILDVNDNVPEVVVTSGSRTIAESAPPGTVIALFQVFDRDSGLNGLVTCSIPRSLPF ELEKSVGNYYRLVTNAALDREEVFLYNITVTATDKGTPPLSTETIISLNVADTNDNPP TFPHSSYSVYVLENNPRGASIFSVNALDPDVDQNAQVSYSLAEDTLQGAPLSSYVSIN SDTGILYALRSFDYEQLRDLQLWVTASDSGDPPLSSNVSLSLFVLDQNDNAPEILYPA LPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFSVGLHTG EVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRIPDILADLGSLEPSA KPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRLQRWHKSRLLQASGGGLASMPGSHF VGVEGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLINQESYEKSEPLLITQDLL ETKGEPRQLQVSFFPPKREE" BASE COUNT 594 a 736 c 682 g 564 t ORIGIN 1 ggaccttcac cgctatttct gagaagagca aaagtgatgc agatctgttc ttcctcttct 61 taatcccaga gaagttccta ataagccagt aatggcgcct ccgcagaggc atccgcagcg 121 cagcgagcag gtcctgctcc tcacgctcct ggggacgctg tggggggccg cggcagcgca 181 gatccgctac tctattcccg aggagctgga gaaaggctcc ttcgtaggca acatcgtcaa 241 ggatctggga ctggagcccc aggagttggc ggagcacgga gtccgcatcg tctccagagg 301 taggatgcag cttttctctc tgaatccgcg aaacggcagc ttggtcaccg cgggtaggat 361 agaccgcgag gagctctgtg ctcagagccc gcggtgtctg gtgagtttta acatccttgt 421 cgaggataaa ctgaatcttt atcccgtgga agtggaaata gtggacatta atgacaatac 481 accccgattc ttaaaggaag aattggaagt gaaaattctc gaaaacgcag ctccatcctc 541 tcgttttcca ctaatggagg tctatgaccc tgatgtggga atgaactccc ttcagggatt 601 taagctcagt ggtaatagtc acttctcagt ggacgtgcaa agcgaagccc atgggcccaa 661 gtacccggag ctggtgctgg agggcacact ggaccgggaa ggagaagccg tttaccgcct 721 ggtccttact gccatggatg gcggcgaccc tgtccgctca agcgtcgccc aaattctggt 781 aacagttcta gatgtgaatg acaacactcc aatgtttact cagcctgtct accgtgtaag 841 tgttcctgaa aacctgccag taggcacacc agtgttggca gtgactgcca ccgaccagga 901 tgaaggagtc cacggggaag taacttattc ctttgtgaag attacagaaa agatctcaca 961 aattttctgt ttgaatgttt tgactggaga aatttcaact tctgcaaatc tagactatga 1021 ggactcgagt ttttatgagc tgggtgttga agcccgggat gggccaggtc ttcgagacag 1081 agcgaaagtc ttaataacta tcttggatgt caatgataat gtaccagaag tggttgttac 1141 atctggaagc agaacaattg ctgaaagtgc acctccagga acagtaatcg ccctttttca 1201 agtgttcgat cgagactctg gcctgaatgg cctggtaacc tgttccatcc cgagaagtct 1261 cccatttgaa ttggaaaaat cagttggcaa ttattatcga ttagtgacaa atgcagctct 1321 agaccgggaa gaggtattct tgtacaacat cactgtgaca gccacggaca aaggaacacc 1381 acctctgtct acagaaacaa tcatctctct aaatgtggca gacaccaacg acaacccgcc 1441 caccttcccc cattcatcct actcagtcta tgtccttgaa aacaacccca ggggtgcctc 1501 catcttctct gtgaatgcac tggaccctga cgtggaccag aacgcccaag tctcctactc 1561 actggcagaa gacaccctcc agggggcgcc cctgtcctcc tacgtgtcca tcaactccga 1621 cactgggatt ctgtacgccc tgcgctcctt cgactatgag cagttgagag acctacagct 1681 gtgggtgaca gccagcgaca gcggggaccc gcctcttagc agcaacgtgt cactgagcct 1741 gtttgtgctg gaccagaatg acaatgcgcc cgagatcctg taccccgccc tccccacaga 1801 cggttccact ggcgtggagc tggcgccccg ctccgcagag cccggctacc tggtgaccaa 1861 ggtggtggcg gtggacagag actcgggcca gaacgcctgg ctgtcctacc gcctgctcaa 1921 ggccagcgag ccaggacttt tctcagtggg cctgcacacg ggcgaggtgc gcacggcgcg 1981 cgccctgctg gacagagacg cgctcaagca gagcctagtg gtggccgtcc aggaccacgg 2041 ccagccccct ctctccgcca ctgtcacgct caccgtggcc gtggccgaca ggatccccga 2101 catcctggcc gacctgggca gcctcgagcc ctccgccaaa cccaacgatt cggacctcac 2161 tctgtacctg gtggtggcgg tggccgcggt ctcctgcgtc ttcctggcct tcgtcatcgt 2221 gctgctggcg ctcagactgc agcgctggca caagtcacgc ctgctgcagg cttcgggagg 2281 tggcttagcg agcatgcccg gctcgcactt tgtgggcgtg gaaggggttc gggctttcct 2341 gcagacctat tcccacgagg tctcactcac tgcagactcg cgtaagagtc atctgatttt 2401 cccccagccc aactatgccg acacgcttat caaccaggag agctatgaga aaagcgagcc 2461 tcttctgata actcaggatt tacttgaaac gaaaggagaa cccaggcaac ttcaggtgag 2521 tttctttccg cctaagcggg aagagtaatc tgatcttccc gcaacccaac taatca //