LOCUS BC136702 2576 bp mRNA linear HUM 12-MAY-2008
DEFINITION Homo sapiens protocadherin gamma subfamily A, 6, mRNA (cDNA clone
MGC:168315 IMAGE:9020692), complete cds.
ACCESSION BC136702
VERSION BC136702.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2576)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2576)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-MAR-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: LLDM Plate: 671 Row: d Column: 2.
FEATURES Location/Qualifiers
source 1..2576
/db_xref="H-InvDB:HIT000500700"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:168315 IMAGE:9020692"
/tissue_type="Brain, cerebellum, PCR rescued clones"
/clone_lib="NIH_MGC_311"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: CTTTCACC"
gene 1..2576
/gene="PCDHGA6"
/gene_synonym="PCDH-GAMMA-A6"
/db_xref="GeneID:56109"
/db_xref="HGNC:HGNC:8704"
/db_xref="MIM:606293"
CDS 92..2548
/gene="PCDHGA6"
/gene_synonym="PCDH-GAMMA-A6"
/codon_start=1
/product="protocadherin gamma subfamily A, 6"
/protein_id="AAI36703.1"
/db_xref="GeneID:56109"
/db_xref="HGNC:HGNC:8704"
/db_xref="MIM:606293"
/translation="MAPPQRHPQRSEQVLLLTLLGTLWGAAAAQIRYSIPEELEKGSF
VGNIVKDLGLEPQELAEHGVRIVSRGRMQLFSLNPRNGSLVTAGRIDREELCAQSPRC
LVSFNILVEDKLNLYPVEVEIVDINDNTPRFLKEELEVKILENAAPSSRFPLMEVYDP
DVGMNSLQGFKLSGNSHFSVDVQSEAHGPKYPELVLEGTLDREGEAVYRLVLTAMDGG
DPVRSSVAQILVTVLDVNDNTPMFTQPVYRVSVPENLPVGTPVLAVTATDQDEGVHGE
VTYSFVKITEKISQIFCLNVLTGEISTSANLDYEDSSFYELGVEARDGPGLRDRAKVL
ITILDVNDNVPEVVVTSGSRTIAESAPPGTVIALFQVFDRDSGLNGLVTCSIPRSLPF
ELEKSVGNYYRLVTNAALDREEVFLYNITVTATDKGTPPLSTETIISLNVADTNDNPP
TFPHSSYSVYVLENNPRGASIFSVNALDPDVDQNAQVSYSLAEDTLQGAPLSSYVSIN
SDTGILYALRSFDYEQLRDLQLWVTASDSGDPPLSSNVSLSLFVLDQNDNAPEILYPA
LPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFSVGLHTG
EVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRIPDILADLGSLEPSA
KPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRLQRWHKSRLLQASGGGLASMPGSHF
VGVEGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLINQESYEKSEPLLITQDLL
ETKGEPRQLQVSFFPPKREE"
BASE COUNT 594 a 736 c 682 g 564 t
ORIGIN
1 ggaccttcac cgctatttct gagaagagca aaagtgatgc agatctgttc ttcctcttct
61 taatcccaga gaagttccta ataagccagt aatggcgcct ccgcagaggc atccgcagcg
121 cagcgagcag gtcctgctcc tcacgctcct ggggacgctg tggggggccg cggcagcgca
181 gatccgctac tctattcccg aggagctgga gaaaggctcc ttcgtaggca acatcgtcaa
241 ggatctggga ctggagcccc aggagttggc ggagcacgga gtccgcatcg tctccagagg
301 taggatgcag cttttctctc tgaatccgcg aaacggcagc ttggtcaccg cgggtaggat
361 agaccgcgag gagctctgtg ctcagagccc gcggtgtctg gtgagtttta acatccttgt
421 cgaggataaa ctgaatcttt atcccgtgga agtggaaata gtggacatta atgacaatac
481 accccgattc ttaaaggaag aattggaagt gaaaattctc gaaaacgcag ctccatcctc
541 tcgttttcca ctaatggagg tctatgaccc tgatgtggga atgaactccc ttcagggatt
601 taagctcagt ggtaatagtc acttctcagt ggacgtgcaa agcgaagccc atgggcccaa
661 gtacccggag ctggtgctgg agggcacact ggaccgggaa ggagaagccg tttaccgcct
721 ggtccttact gccatggatg gcggcgaccc tgtccgctca agcgtcgccc aaattctggt
781 aacagttcta gatgtgaatg acaacactcc aatgtttact cagcctgtct accgtgtaag
841 tgttcctgaa aacctgccag taggcacacc agtgttggca gtgactgcca ccgaccagga
901 tgaaggagtc cacggggaag taacttattc ctttgtgaag attacagaaa agatctcaca
961 aattttctgt ttgaatgttt tgactggaga aatttcaact tctgcaaatc tagactatga
1021 ggactcgagt ttttatgagc tgggtgttga agcccgggat gggccaggtc ttcgagacag
1081 agcgaaagtc ttaataacta tcttggatgt caatgataat gtaccagaag tggttgttac
1141 atctggaagc agaacaattg ctgaaagtgc acctccagga acagtaatcg ccctttttca
1201 agtgttcgat cgagactctg gcctgaatgg cctggtaacc tgttccatcc cgagaagtct
1261 cccatttgaa ttggaaaaat cagttggcaa ttattatcga ttagtgacaa atgcagctct
1321 agaccgggaa gaggtattct tgtacaacat cactgtgaca gccacggaca aaggaacacc
1381 acctctgtct acagaaacaa tcatctctct aaatgtggca gacaccaacg acaacccgcc
1441 caccttcccc cattcatcct actcagtcta tgtccttgaa aacaacccca ggggtgcctc
1501 catcttctct gtgaatgcac tggaccctga cgtggaccag aacgcccaag tctcctactc
1561 actggcagaa gacaccctcc agggggcgcc cctgtcctcc tacgtgtcca tcaactccga
1621 cactgggatt ctgtacgccc tgcgctcctt cgactatgag cagttgagag acctacagct
1681 gtgggtgaca gccagcgaca gcggggaccc gcctcttagc agcaacgtgt cactgagcct
1741 gtttgtgctg gaccagaatg acaatgcgcc cgagatcctg taccccgccc tccccacaga
1801 cggttccact ggcgtggagc tggcgccccg ctccgcagag cccggctacc tggtgaccaa
1861 ggtggtggcg gtggacagag actcgggcca gaacgcctgg ctgtcctacc gcctgctcaa
1921 ggccagcgag ccaggacttt tctcagtggg cctgcacacg ggcgaggtgc gcacggcgcg
1981 cgccctgctg gacagagacg cgctcaagca gagcctagtg gtggccgtcc aggaccacgg
2041 ccagccccct ctctccgcca ctgtcacgct caccgtggcc gtggccgaca ggatccccga
2101 catcctggcc gacctgggca gcctcgagcc ctccgccaaa cccaacgatt cggacctcac
2161 tctgtacctg gtggtggcgg tggccgcggt ctcctgcgtc ttcctggcct tcgtcatcgt
2221 gctgctggcg ctcagactgc agcgctggca caagtcacgc ctgctgcagg cttcgggagg
2281 tggcttagcg agcatgcccg gctcgcactt tgtgggcgtg gaaggggttc gggctttcct
2341 gcagacctat tcccacgagg tctcactcac tgcagactcg cgtaagagtc atctgatttt
2401 cccccagccc aactatgccg acacgcttat caaccaggag agctatgaga aaagcgagcc
2461 tcttctgata actcaggatt tacttgaaac gaaaggagaa cccaggcaac ttcaggtgag
2521 tttctttccg cctaagcggg aagagtaatc tgatcttccc gcaacccaac taatca
//