LOCUS BC136623 4183 bp mRNA linear HUM 11-FEB-2009
DEFINITION Homo sapiens papilin, proteoglycan-like sulfated glycoprotein, mRNA
(cDNA clone MGC:168236 IMAGE:9020613), complete cds.
ACCESSION BC136623
VERSION BC136623.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4183)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4183)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-MAR-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Ambion
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: LLDM Plate: 670 Row: p Column: 19
single stranded.
FEATURES Location/Qualifiers
source 1..4183
/db_xref="H-InvDB:HIT000500633"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:168236 IMAGE:9020613"
/tissue_type="Testicle, PCR rescued clones"
/clone_lib="NIH_MGC_382"
/lab_host="DH10B"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: CGTCACCA"
gene 1..4183
/gene="PAPLN"
/db_xref="GeneID:89932"
/db_xref="HGNC:HGNC:19262"
CDS 21..2447
/gene="PAPLN"
/codon_start=1
/product="PAPLN protein"
/protein_id="AAI36624.1"
/db_xref="GeneID:89932"
/db_xref="HGNC:HGNC:19262"
/translation="MRLLLLVPLLLAPAPGSSAPKVRRQSDTWGPWSQWSPCSRTCGG
GVSFRERPCYSQRRDGGSSCVGPARSHRSCRTESCPDGARDFRAEQCAEFDGAEFQGR
RYRWLPYYSAPNKCELNCIPKGENFYYKHREAVVDGTPCEPGKRDVCVDGSCRVVGCD
HELDSSKQEDKCLRCGGDGTTCYPVAGTFDANDLSRGYNQILIVPMGATSILIDEAAA
SRNFLAVKNVRGEYYLNGHWTIEAARALPAASTILHYERGAEGDLAPERLHARGPTSE
PLVIELISQEPNPGVHYEYHLPLRRPSPGFSWSHGSWSDCSAECGGGHQSRLVFCTID
HEAYPDHMCQRQPRPADRRSCNLHPCPETKRWKAGPWAPCSASCGGGSQSRSVYCISS
DGAGIQEAVEEAECAGLPGKPPAIQACNLQRCAAWSPEPWGECSVSCGVGVRKRSVTC
RGERGSLLHTAACSLEDRPPLTEPCVHEDCPLLSDQAWHVGTWGLCSKSCSSGTRRRQ
VICAIGPPSHCGSLQHSKPVDVEPCNTQPCHLPQEVPSMQDVHTPASNPWMPLGPQES
PASDSRGQWWAAQEHPSARGDHRGERGDPRGDQGTHLSALGPAPSLQQPPYQQPLRSG
SGPRDCRHSPHGCCPDGHTASLGPQWQGCPGAPCQQSRYGCCPDRVSVAEGPHHAGCT
KSYGGDSTGGMPRSRAVASTVHNTHQPQAQQNEPSECRGSQFGCCYDNVATAAGPLGE
GCVGQPSHGLAWQVWSPRWCRQPWGSWCGSPAQTTLPRNPRLPGRKMASPSPLTGVCD
GPPTSSDRCV"
BASE COUNT 769 a 1319 c 1277 g 818 t
ORIGIN
1 gccagcgaag acaggctgag atgcggctgc tcctgctcgt gccgctgctg ctggctccag
61 cgcccgggtc ctcggctccc aaggtgaggc ggcagagtga cacctgggga ccctggagcc
121 agtggagccc ctgcagccgg acctgtggag ggggtgtcag cttccgggag cgcccctgct
181 actcccagag gagagatgga ggctccagct gcgtgggccc cgcccggagc caccgctctt
241 gtcgcacgga gagctgcccc gacggcgccc gggacttccg ggccgagcag tgcgcggagt
301 tcgacggagc ggagttccag gggcggcggt atcggtggct gccctactac agcgccccaa
361 acaagtgtga actgaactgc attcccaagg gggagaactt ctactacaag cacagggagg
421 ctgtggttga tgggacgccc tgcgagcctg gcaagaggga tgtctgtgtg gatggcagct
481 gccgggttgt cggctgtgat cacgagctgg actcgtccaa gcaggaggac aagtgtctgc
541 ggtgtggggg tgacggcacg acctgctacc ccgtcgcagg cacctttgac gctaatgacc
601 tcagccgagg ctacaaccag atcctcatag ttcccatggg tgccaccagc atcctcatcg
661 acgaggctgc tgccagcagg aacttcctgg ctgtgaagaa tgttcgtggg gaatactacc
721 tcaatgggca ctggaccatc gaggcggccc gggccctgcc agcagccagc accatcctgc
781 attacgagcg gggtgctgag ggggacctgg cccctgagcg actccatgcc cggggcccca
841 cctcggagcc cctggtcatc gagctcatca gccaggagcc caaccccggt gtgcactatg
901 agtaccacct gcccctgcgc cgccccagcc ccggcttcag ctggagccac ggctcatgga
961 gtgactgcag cgcggagtgt ggcggaggtc accagtcccg cctggtgttc tgcaccatcg
1021 accatgaggc ctaccccgac cacatgtgcc agcgccagcc acggccagct gaccggcgtt
1081 cctgcaatct tcacccttgc ccggagacca agcgctggaa ggcagggcca tgggcaccct
1141 gctcagcctc ctgtggagga ggctcccagt cccgctccgt gtactgcatc tcgtctgacg
1201 gggccggcat ccaggaggcc gtggaggagg ctgagtgtgc cgggctgcct gggaagcccc
1261 ctgccattca ggcctgtaac ctgcagcgct gtgcagcctg gagcccggag ccctggggag
1321 agtgttctgt cagttgtggc gttggcgtcc ggaagcggag cgttacttgc cggggtgaaa
1381 ggggttcttt gctccatacc gcagcgtgct ccttggaaga ccggccacct ctgactgagc
1441 cctgtgtgca tgaggactgc cccctcctca gtgaccaggc ctggcatgtt ggcacctggg
1501 gtctatgctc caagagctgc agctcgggca ctcggaggcg acaggtcatc tgtgccattg
1561 ggccgcccag ccactgcggg agcctgcagc actccaagcc tgtggatgtg gagccttgta
1621 acacgcagcc ctgtcatctc ccccaggagg tccccagcat gcaggatgtg cacacccctg
1681 ccagcaaccc ctggatgccg ttgggccctc aggagtcccc tgcctcagac tccagaggcc
1741 agtggtgggc agcccaggaa cacccctcag ccaggggtga ccacagggga gaacgaggtg
1801 accccagggg cgaccaaggc acccacctgt cagccctggg ccccgctccc tctctgcagc
1861 agcccccata ccagcaaccc ctgcggtcgg gctcagggcc ccgcgactgc agacacagtc
1921 ctcacgggtg ctgccccgat ggccacacgg catctctcgg gcctcagtgg caaggctgcc
1981 ctggggcccc ctgtcagcag agcaggtacg ggtgctgccc tgacagggta tctgtcgctg
2041 aggggcccca tcacgctggc tgcacaaagt cgtatggtgg tgacagcacc gggggcatgc
2101 ccaggtcaag ggcagtggct tctacagtcc acaacaccca ccagccccag gcccagcaga
2161 atgagcccag tgagtgccgg ggctcccagt ttggctgttg ctatgacaac gtggccactg
2221 cagccggtcc tcttggggaa ggctgtgtgg gccagcccag ccatggatta gcttggcagg
2281 tgtggagccc tcgttggtgc aggcagccct ggggcagttg gtgcggctct cctgctcaga
2341 cgacactgcc ccggaatccc aggctgcctg gcagaaagat ggccagccca tctcctctga
2401 caggtgtgtg tgacggcccc ccgacctcct ctgacaggtg tgtgtgacgg ccccccgacc
2461 tcctctgaca ggttcacgtg acagctccct ccacctccgc tgacaggcac aggctgcagt
2521 tcgacggatc cctgatcatc caccccctgc aggcagagga cgcgggcacc tacagctgtg
2581 gcagcacccg gccaggccgc gactcccaga agatccaact tcgcatcata gggggtgaca
2641 tggccgtgct gtctgaggct gagctgagcc gcttccctca gcccagggac ccagctcagg
2701 actttggcca agcgggggct gctgggcccc tgggggccat cccctcttca cacccacagc
2761 ctgcaaacag gctgcgtttg gaccagaacc agccccgggt ggtggatgcc agtccaggcc
2821 agcggatccg gatgacctgc cgtgccgaag gcttcccgcc cccagccatc gagtggcaga
2881 gagatgggca gcctgtctct tctcccagac accagctgca gcctgatggc tccctggtca
2941 ttagccgagt ggctgtagaa gatggcggct tctacacctg tgtcgctttc aatgggcagg
3001 accgagacca gcgatgggtc cagctcagag ttctggggga gctgacaatc tcaggactgc
3061 cccctactgt gacagtgcca gagggtgata cggccaggct attgtgtgtg gtagcaggag
3121 aaagtgtgaa catcaggtgg tccaggaacg ggctacctgt gcaggctgat ggccaccgtg
3181 tccaccagtc cccagatggc acgctgctca tttacaactt gcgggccagg gatgagggct
3241 cctacacgtg cagtgcctac caggggagcc aggcagtcag ccgcagcacc gaggtgaagg
3301 tggtctcacc agcacccacc gcccagccca gggaccctgg cagggactgc gtcgaccagc
3361 cagagctggc caactgtgat ttgatcctgc aggcccagct ttgtggcaat gagtattact
3421 ccagcttctg ctgtgccagc tgttcacgtt tccagcctca cgctcagccc atctggcagt
3481 agggatgaag gctagttcca gccccagtcc aaaatagttc atagggctag ggagaaagga
3541 agatggactc ttggcttcct ctctctggct ggcaaaggga gttatcttct ggaatacatt
3601 agctctttca aaaacccacc cagtgtttag cctcaacggc agccagttac cagcttctct
3661 ctgtagcctt cagcagtgtt tgcatctctg acataaccac aggctgctgt tttcaagaag
3721 agcaatctgt ttggataaga aaaaccttta ctttacagct tccctttata atttgttaca
3781 caggaatagt taaatgcatt tgtttgtttg ttttttgaga cggagtttca ctcttgttgc
3841 ccaggctgga gggcaatggc gcgatctcgg ctcactgcaa cctccgtctc ctgggttctt
3901 gattctcctg tgtcagcctt ctgagtggct gggattacag atgcctatca ccatgcctgg
3961 gtaatttttg tatttttagt tgagatgggg tttcaccatg ttggccaggc tggtctcgaa
4021 cttctgacct cagatgatct gcccgcctca gcctcccaaa gtgctgggat tacgggcatg
4081 agccaccacg cccagccatc aatgcatttt ttttattttt tttttgagac agagtttcgc
4141 acttcttgcc caggctggag tacaatggtg cgatcttggc tca
//