LOCUS BC136617 4650 bp mRNA linear HUM 11-FEB-2009
DEFINITION Homo sapiens fibronectin type III domain containing 3A, mRNA (cDNA
clone MGC:168230 IMAGE:9020607), complete cds.
ACCESSION BC136617
VERSION BC136617.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4650)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4650)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-MAR-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Ambion
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: LLDM Plate: 670 Row: p Column: 13
single stranded.
FEATURES Location/Qualifiers
source 1..4650
/db_xref="H-InvDB:HIT000500627"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:168230 IMAGE:9020607"
/tissue_type="Testicle, PCR rescued clones"
/clone_lib="NIH_MGC_382"
/lab_host="DH10B"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: CCACCACC"
gene 1..4650
/gene="FNDC3A"
/gene_synonym="bA203I16.1"
/gene_synonym="bA203I16.5"
/gene_synonym="HUGO"
/gene_synonym="RP11-203I16.5"
/db_xref="GeneID:22862"
/db_xref="HGNC:HGNC:20296"
CDS 74..3670
/gene="FNDC3A"
/gene_synonym="bA203I16.1"
/gene_synonym="bA203I16.5"
/gene_synonym="HUGO"
/gene_synonym="RP11-203I16.5"
/codon_start=1
/product="FNDC3A protein"
/protein_id="AAI36618.1"
/db_xref="GeneID:22862"
/db_xref="HGNC:HGNC:20296"
/translation="MAEHPPLLDTTQILSSDISLLSAPIVSADGTQQVILVQVNPGEA
FTIRREDGQFQCITGPAQVPMMSPNGSVPPIYVPPGYAPQVIEDNGVRRVVVVPQAPE
FHPGSHTVLHRSPHPPLPGFIPVPTMMPPPPRHMYSPVTGAGDMTTQYMPQYQSSQVY
GDVDAHSTHGRSNFRDERSSKTYERLQKKLKDRQGTQKDKMSSPPSSPQKCPSPINEH
NGLIKGQIAGGINTGSAKIKSGKGKGGTQVDTEIEEKDEETKAFEALLSNIVKPVASD
IQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYKSVYVGEETNITL
NDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTTLSCEPDIPNPPRIANRTKNSLTLQWK
APSDNGSKIQNFVLEWDEGKGNGEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYG
TSGFSEEVLYYTSGCAPSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEE
TSGYGFKPKYDGEDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDKPGI
PVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSGATREHL
CDRLNPGCFYRLRVYCISDGGQSAVSESLLVQTPAVPPGPCLPPRLQGRPKAKEIQLR
WGPPLVDGGSPISCYSVEMSPIEKDEPREVYQGSEVECTVSSLLPGKTYSFRLRAANK
MGFGPFSEKCDITTAPGPPDQCKPPQVTCRSATCAQVNWEVPLSNGTDVTEYRLEWGG
VEGSMQICYCGPGLSYEIKGLSPATTYYCRVQALSVVGAGPFSEVVACVTPPSVPGIV
TCLQEISDDEIENPHYSPSTCLAISWEKPCDHGSEILAYSIDFGDKQSLTVGKVTSYI
INNLQPDTTYRIRIQALNSLGAGPFSHMIKLKTKPLPPDPPRLECVAFSHQNLKLKWG
EGTPKTLSTDSIQYHLQMEDKNGRFVSLYRGPCHTYKVQRLNESTSYKFCIQACNEAG
EGPLSQEYIFTTPKSVPAALKAPKIEKVNDHICEITWECLQPMKGDPVIYSLQVMLGK
DSEFKQIYKGPDSSFRYSSLQLNCEYRFRVCAIRQCQDSLGHQDLVGPYSTTVLFISQ
RTEPPASTNRDTVESTRTRRALSDEQCAAVILVLFAFFSILIAFIIQYFVIK"
BASE COUNT 1472 a 927 c 942 g 1309 t
ORIGIN
1 ttgacacggc tttggaaacg acgtcatgtg ttagaattgg agcgttattc agtatattaa
61 tgtcttattg ataatggcag aacatccacc actactggat acaactcaga tcttaagtag
121 tgatatttct cttttgtctg cccctattgt aagtgcagat ggaacacaac aggttattct
181 ggtacaagtt aacccaggag aagcatttac aataagaaga gaagatggac agtttcagtg
241 cattacaggt cctgctcagg ttccaatgat gtccccaaat ggttctgtgc ctcctatcta
301 tgtgcctcct ggatatgccc cacaggttat tgaagacaat ggtgttcgaa gagttgtcgt
361 ggtccctcag gcaccagagt ttcaccctgg tagtcacaca gttctccacc gttctccaca
421 tcctcctcta cctggtttca ttcctgtccc aactatgatg ccgcctccac cacgtcatat
481 gtactcaccc gtgactggag ctggagacat gacaacacag tatatgccac agtatcagtc
541 ttcacaagtc tatggagatg tagatgctca ctctacacat ggaaggtcca actttagaga
601 tgaacgatct agtaaaacat atgaacgttt gcagaaaaaa ttgaaggatc gccaaggaac
661 acagaaagat aaaatgagca gtccaccatc atcaccccag aaatgccctt ctcccattaa
721 tgaacataat ggacttataa aaggacaaat tgctggtggt ataaacacag gatcagcaaa
781 aatcaagtct gggaagggga aaggtggtac acaagttgat acagaaattg aagaaaaaga
841 tgaagaaact aaagcatttg aagcacttct ttccaacatt gtcaaaccag tggcctccga
901 catccaggca aggacagtag tacttacctg gtcaccacct tccagcctca ttaatggtga
961 aacagatgaa agtagtgtac cagagctcta tggttatgaa gttctgatct caagtactgg
1021 aaaagatggg aaatacaaaa gtgtatatgt aggagaagaa acaaatatca ctttaaatga
1081 tctcaagcca gccatggatt accatgcaaa agtccaggca gaatataatt ctataaaggg
1141 aactccttca gaggctgaaa tctttaccac cttgagctgt gaacctgata tacctaatcc
1201 accaaggata gccaatcgga ccaaaaattc actcactttg caatggaagg cacctagtga
1261 caatggttct aaaatccaaa actttgtatt agaatgggat gaaggaaaag gaaatggaga
1321 attttgtcag tgttacatgg gctcacagaa acaatttaaa attactaaac tttcaccagc
1381 aatgggctgt aaattcagac tatcggccag aaatgactat ggtacaagtg gttttagtga
1441 agaagtctta tattacacct caggctgtgc tccttctatg ccagcaagtc ctgtattaac
1501 caaggctgga attacttggt tatccttaca atggagtaag ccctcaggaa caccatcaga
1561 tgaaggaatt tcttacattt tagagatgga ggaagaaact tcaggatatg gttttaagcc
1621 taaatatgat ggagaagatc ttgcttacac agtgaaaaat ctcagacgta gtactaagta
1681 taaatttaag gttattgctt acaactcaga aggtaaaagt aatccaagtg aagtagtaga
1741 atttactact tgccctgata aaccaggcat acctgtaaag ccttcagtga aaggaaagat
1801 acattcacac agttttaaaa taacctggga tccaccaaaa gacaatggcg gagcaaccat
1861 caataaatat gtagtggaga tggcagaagg ttctaacgga aacaaatggg aaatgatata
1921 cagtggtgct accagggaac atctttgtga tcgactgaat ccaggctgtt tctatcgttt
1981 acgagtttac tgcatcagtg atggaggaca gagtgcggtc tctgaatctt tacttgtgca
2041 gactccagct gtgcctcctg gcccatgcct ccctcccaga ttacagggta gacccaaagc
2101 aaaagaaata cagttacgat ggggaccccc tctggttgat ggtggatcac ccatttcctg
2161 ttacagtgtg gaaatgtctc ctatagaaaa agatgaacct agagaagttt accaaggttc
2221 tgaagtagaa tgtacagtga gcagccttct tcctggaaag acatacagct tcagactacg
2281 tgcagctaac aaaatggggt ttggaccatt ttcagaaaaa tgtgatatta ctacagcccc
2341 tgggccacca gatcagtgca agccccctca agtgacatgt agatctgcaa cttgtgcaca
2401 agtgaattgg gaggttcctt tgagtaatgg aacagatgtc actgaatatc gactggagtg
2461 gggaggagtt gaaggaagta tgcagatatg ttactgtggg cctggtctca gttatgaaat
2521 aaaaggactt tcaccagcaa ctacctatta ttgcagggtc caggctctga gtgttgtggg
2581 tgcaggccct ttcagtgaag tagtagcctg tgtgactcca ccatcagttc ctggcattgt
2641 gacctgtctt caagaaataa gcgatgatga gatagaaaat ccccattatt caccttctac
2701 atgccttgca ataagctggg aaaagccttg tgatcatggt tcggaaatcc ttgcctacag
2761 catagacttt ggagataaac aatccctaac agtgggaaag gttacaagct atattatcaa
2821 caatttgcaa ccagatacaa catacagaat acgaattcaa gccttgaata gccttggagc
2881 tggtcctttc agccatatga taaaattaaa aactaagcct ctccctcctg atccacctcg
2941 tctggaatgt gttgccttta gccaccagaa ccttaagctg aaatggggag aaggaactcc
3001 aaagacattg tcaaccgatt ctattcagta ccaccttcag atggaggata agaatggacg
3061 gtttgtatcc ctatacagag gaccatgtca tacatacaaa gtacaaagac ttaatgagtc
3121 aacatcctat aaattctgta ttcaagcttg taatgaagct ggggaaggtc ccctctccca
3181 agaatatatt ttcactactc caaaatctgt cccagctgcc ttgaaagccc ccaaaataga
3241 gaaagtaaat gatcacattt gtgaaattac atgggagtgt ttacagccaa tgaaaggtga
3301 tccagttatt tacagtcttc aagttatgtt gggaaaagat tcagaattca aacagattta
3361 caagggtccc gactcttcct tccggtattc cagccttcag ctgaactgtg aatatcgctt
3421 ccgtgtatgt gccattcgcc agtgccaaga ctctctggga caccaggacc tcgtaggtcc
3481 ctacagcacc acagtgctct tcatctctca gaggactgaa ccaccagcca gcaccaacag
3541 agacactgtg gaaagcacaa ggacccgacg ggcactgagt gacgagcagt gtgctgccgt
3601 catccttgtg ctgtttgctt tcttttccat tttgattgcc tttatcattc agtactttgt
3661 aatcaagtga aaatataact ttatttttta actctattac attttatttt gtcatgtact
3721 aaaattattt ctgtattgct tttataaaaa acagtggcat ttagcactgg cattgagact
3781 atagcacatc atttttgcca ttttcagtgc ttatattgtt aggtagaggc tggcacttta
3841 ttagaatgca agccacaaaa atatcaattt tgtttttttt gttagggtgg gtcttctttt
3901 tttctttccc tctctctttt ttttaacaaa tgccttctta tagaaaaact ttctaagagg
3961 caacaattta gaatggatat tttgacgaat cggcatgagt gtaacagtga taacctgatc
4021 tgtttgtttt aaagattatt accaagtgaa aaattcagaa tgaatagaat ttacactaac
4081 atgctatata aaatgttaaa gtctgatgct gtgaaagcaa tctagtgcta tatttctacc
4141 tcctcatttg tcttaattat ttggtaagtg ggattatgat gagtaactgg aggggcttag
4201 aaacaaaaac tggatgaaag agtatgcatg aagaaaagct tctttgataa atgtggagtt
4261 cttcattata aatatatatt catgaattca cagataagta cttaaagaac agacagttta
4321 cttggcctaa aaatattttg atgtttactc aaaaagtacc tcttcaggtc ttgagaacat
4381 ggaaaagaat tgagtgcttt taaatacttt ttagaaagta atcataaaag taaattgaat
4441 ttcaaaccta tttggcttct gttttgtgaa cctttgaact atatgtatgt gtataagggt
4501 atacacatac atatatggca tataacaagt gtacacatat acacataaca agtgtagaag
4561 tatatattac atacatacac tcactctgtc tggtataggc taattttgaa gaactcccat
4621 aagtttctgc tgcttctccc ataactgctg
//