LOCUS BC136615 5230 bp mRNA linear HUM 11-FEB-2009 DEFINITION Homo sapiens PHD and ring finger domains 1, mRNA (cDNA clone MGC:168228 IMAGE:9020605), complete cds. ACCESSION BC136615 VERSION BC136615.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 5230) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 5230) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2007) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Mike Brownstein, NIMH cDNA Library Preparation: British Columbia Cancer Research Center cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRCB Plate: 13 Row: A Column: 10 single stranded. FEATURES Location/Qualifiers source 1..5230 /db_xref="H-InvDB:HIT000500625" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:168228 IMAGE:9020605" /tissue_type="Pooled, cerebellum, kidney, placenta, testis, lung, colon, liver, heart, thyroid, bladder, uterus, PCR rescued clones" /clone_lib="NIH_MGC_364" /lab_host="DH10B" /note="Vector: pCR-XL-TOPO with reversed insert; Clone identification sequence tag: AAATGGTA" gene 1..5230 /gene="PHRF1" /db_xref="GeneID:57661" /db_xref="HGNC:HGNC:24351" /db_xref="MIM:611780" CDS 94..5043 /gene="PHRF1" /codon_start=1 /product="PHD and ring finger domains 1" /protein_id="AAI36616.1" /db_xref="GeneID:57661" /db_xref="HGNC:HGNC:24351" /db_xref="MIM:611780" /translation="MDDDSLDELVARSPGPDGHPQVGPADPAGDFEESSVGSSGDSGD DSDSEHGDGTDGEDEGASEEEDLEDRSGSEDSEDDGETLLEVAGTQGKLEAAGSFNSD DDAESCPICLNAFRDQAVGTPENCAHYFCLDCIVEWSKNANSCPVDRTLFKCICIRAQ FGGKILRKIPVENTKASEEEEDPTFCEVCGRSDREDRLLLCDGCDAGYHMECLDPPLQ EVPVDEWFCPECAAPGVVLAADAGPVSEEEVSLLLADVVPTTSRLRPRAGRTRAIART RQSERVRATVNRNRISTARRVQHTPGRLGSSLLDEAIEAVATGLSTAVYQRPLTPRTP ARRKRKTRRRKKVPGRKKTPSGPSAKSKSSATRSKKRQHRVKKRRGKKVKSEATTRSR IARTLGLRRPVHSSCIPSVLKPVEPSLGLLRADIGAASLSLFGDPYELDPFDSSEELS ANPLSPLSAKRRALSRSALQSHQPVARPVSVGLSRRRLPAAVPEPDLEEEPVPDLLGS ILSGQSLLMLGSSDVIIHRDGSLSAKRAAPVSFQRNSGSLSRGEEGFKGCLQPRALPS GSPAQGPSGNRPQSTGLSCQGRSRTPARTAGAPVRLDLPAAPGAVQARNLSNGSVPGF RQSHSPWFNGTNKHTLPLASAASKISSRDSKPPCRSVVPGPPLKPAPRRTDISELPRI PKIRRDDGGGRRDAAPAHGQSIEIPSACISRLTGREGTGQPGRGTRAESEASSRVPRE PGVHTGSSRPPAPSSHGSLAPLGPSRGKGVGSTFESFRINIPGNMAHSSQLSSPGFCN TFRPVDDKEQRKENPSPLFSIKKTKQLRSEVYDPSDPTGSDSSAPGSSPERSGPGLLP SEITRTISINSPKAQTVQAVRCVTSYTVESIFGTEPEPPLGPSSAMSKLRGAVAAEGA SDTEREEPTESQGLAARLRRPSPPEPWDEEDGASCSTFFGSEERTVTCVTVVEPEAPP SPDVLQAATHRVVELRPPSRSRSTSSSRSRKKAKRKRVSREHGRTRSGTRSESRDRSS RSASPSVGEERPRRQRSKAKSRRSSSDRSSSRERAKRKKAKDKSREHRRGPWGHSRRT SRSRSGSPGSSSYEHYESRKKKKRRSASRPRGRECSPTSSLERLCRHKHQRERSHERP DRKESVAWPRDRRKRRSRSPSSEHRAREHRRPRSREKWPQTRSHSPERKGAVREASPA PLAQGEPGREDLPTRLPALGEAHVSPEVATADKAPLQAPPVLEVAAECEPDDLDLDYG DSVEAGHVFDDFSSDAVFIQLDDMSSPPSPESTDSSPERDFPLKPALPPASLAVAAIQ REVSLMHDEDPSQPPPLPEGTQEPHLLRPDAAEKAEAPSSPDVAPAGKEDSPSASGRV QEAARPEEVVSQTPLLRSRALVKRVTWNLQESESSAPAEDRAPRAPLHRPQKPREGAW DMEDVAPTGVRQAFSELPFPSHVLPEPGFPDTDPSQVYSPGLPPAPAQPSSIPPCALV SQPTVQFILQGSLPLVGCGAAQTLAPVPAALTPASEPASQATAASNSEEKTPAPRLAA EKTKKEEYMKKLHMQERAVEEVKLAIKPFYQKREVTKEEYKDILRKAVQKICHSKSGE INPVKVANLVKAYVDKYRHMRRHKKPEAGEEPPTQGAEG" BASE COUNT 1102 a 1610 c 1744 g 774 t ORIGIN 1 gcctaggagc gactctcggt cgtgcagcgg cggcgagcgc tcgcgagcgg ctgcgggacg 61 cgaggtttcc ggagctgagc tcaatgtgca gcaatggatg acgacagcct ggatgagctt 121 gtggcccgga gcccagggcc ggatggacac ccacaggtcg gccctgcgga cccggcaggt 181 gactttgaag aaagcagcgt gggcagcagt ggggactctg gggacgacag tgacagcgag 241 catggagatg gcacagacgg agaagacgag ggggcgtctg aggaggaaga cctggaagac 301 agatctggtt ccgaggattc tgaagacgac ggggagacat tgctggaggt agcgggtact 361 caggggaaac tggaagccgc tggctctttc aattctgatg atgatgcaga gagctgccca 421 atctgtctca acgcattcag agaccaggcc gtggggacgc cggagaactg tgcacattac 481 ttctgcctgg actgcattgt cgaatggtcc aagaatgcca attcctgtcc agttgatcga 541 actctattta agtgcatttg tattcgagct caatttggtg gtaaaatctt aagaaagatc 601 ccagtggaga acaccaaagc gagcgaggag gaggaggacc cgaccttctg tgaggtgtgc 661 ggcaggagcg accgtgagga caggcttttg ctctgcgacg gctgcgatgc ggggtaccac 721 atggaatgct tggacccccc tctccaggag gtgccggtgg acgagtggtt ctgcccggaa 781 tgtgctgcgc ctggtgttgt ccttgccgct gatgcgggtc ccgtgagtga ggaggaggtc 841 tccctgctct tggctgatgt ggtgcccacc accagcaggc ttcggcctcg agcaggtagg 901 acccgggcga tagccaggac acggcagagt gagagagtga gagcaaccgt gaaccggaac 961 cggatctcca cggccaggag ggtccagcac acaccagggc gcctcgggtc ttccctgctg 1021 gatgaagcca tcgaggctgt ggcgactggc ctgagcactg ccgtgtatca gcgccccctg 1081 acgccgcgca ctcccgcccg acggaagagg aagacaagaa gacggaagaa agtgccggga 1141 agaaagaaaa ccccgtccgg accatccgca aaaagtaaga gctcagcgac aagatctaag 1201 aaacgccaac atcgagtgaa gaagagaaga gggaagaagg taaagagtga agccaccact 1261 cgctctcgaa tcgcgcggac gctgggcctg cgcaggcctg ttcacagcag ctgcatcccg 1321 tcagtgttga agccagtgga gccctctttg gggctgctga gagcggatat tggagctgcc 1381 tctctgtctc tgtttggaga tccttatgag ctggatccct tcgacagcag tgaagagctt 1441 tctgcaaacc ctctttcccc tctgagtgcc aagagacggg ctctgtcccg gtcagccctg 1501 cagtcccacc agcccgtggc caggcccgtc tccgtggggc tttccaggag gcgcctccct 1561 gccgcggtgc cagagccaga cttggaggag gagccagtgc ctgacctgct gggcagcatc 1621 ctgtcgggcc agagcctcct gatgctgggc agcagtgatg tcatcatcca ccgcgacggc 1681 tccctcagcg ccaagagggc ggctccagtt tcttttcagc gaaactcagg cagtctgtcc 1741 agaggggaag aaggattcaa gggctgcctg cagccccgag cactgccctc cgggagcccg 1801 gcccaaggcc catcaggaaa caggccacag agcacagggc tcagctgtca aggcaggtcc 1861 cgcacccccg cccgcaccgc gggggcgcct gtgaggctgg acttgccagc agcccctggg 1921 gcggttcagg ctcggaactt gtcaaatggg agtgtgcctg gcttcagaca gagccacagc 1981 ccctggttca acggcaccaa caagcacacc ttgccccttg cctctgccgc gtctaagatc 2041 tcaagcagag attctaagcc cccatgtcgc agtgtggtgc cggggcctcc cctgaagcca 2101 gcgcccagaa gaacagacat ctctgagcta cccaggatac caaagatcag gagagatgac 2161 ggtggtggca gacgggatgc ggccccggcc cacgggcaga gcattgagat ccccagtgcc 2221 tgcatcagcc gactgactgg cagggagggc accgggcagc cagggcgagg cacacgggca 2281 gagagcgagg ccagcagcag ggtgccccgg gagcccgggg tgcacacggg cagctcccgg 2341 cccccagccc ccagctccca tggcagtttg gccccactgg gaccatcaag agggaaaggg 2401 gtcgggtcga cctttgagag cttccggatc aatattcctg gaaacatggc acattccagc 2461 cagctctcca gccctggctt ctgtaacacg ttccggcctg tggacgataa ggagcagagg 2521 aaggagaacc cctcacccct cttctccatc aagaagacga agcagctgcg gagcgaggtc 2581 tacgacccat ccgaccccac cggctccgac tccagcgccc ctggcagcag ccccgagagg 2641 tctggccccg gcctcctgcc ctctgagatc acacgaacca tctccatcaa cagcccgaag 2701 gcccagacgg tgcaggctgt gcgctgcgtc acctcctaca cggtggagag catctttggt 2761 acagagcccg aaccccctct cggaccgtcc tccgccatgt ccaagctccg gggtgcagtg 2821 gctgccgagg gggcctctga cacggagcga gaggagccca cagagagcca gggcctggct 2881 gcccggctgc ggaggccatc ccccccagag ccctgggatg aggaggatgg ggcgtcttgc 2941 agcaccttct ttggctctga ggagcggacg gtgacctgtg tgactgtcgt ggagccggaa 3001 gccccaccca gcccggacgt gctgcaggct gccacccaca gagtcgtgga gctcaggccc 3061 ccttcccggt cccgctccac atccagctcc cgcagcagga agaaggccaa gaggaagagg 3121 gtgtccaggg agcacggacg gacgcgctct gggacgcgct ctgaatccag ggacaggagc 3181 tcgaggtcag cgtcaccatc agtgggtgag gagcgcccca ggaggcagcg gtccaaggcc 3241 aagagccggc ggtcctccag tgaccgctcc agcagccgag agcgagctaa gaggaagaaa 3301 gccaaggaca agagcaggga gcacaggcgg ggcccctggg gccacagccg gaggacgtcc 3361 cggtcgcggt cggggagccc tggcagctct tcctatgagc actatgagag taggaagaag 3421 aagaaaagga gatcagcgtc cagacctcgg ggaagggagt gctcccccac cagcagcctg 3481 gagaggctct gcaggcacaa gcatcagcgg gaacgcagcc acgagcggcc agacaggaag 3541 gagagtgtgg cgtggccccg agaccggagg aagcggaggt cccggtcccc aagctcggag 3601 cacagggcac gggagcacag gcggcctcgg tcccgtgaga agtggccgca gacccggtcc 3661 cattccccag agaggaaggg ggctgtgagg gaggcttccc cagcacccct tgcacagggg 3721 gagccagggc gggaagacct ccccaccagg ttgccagcct tgggggaagc acatgtctcg 3781 ccggaggtgg ctacggccga caaggccccc ctgcaggctc cccctgtcct ggaggtggca 3841 gctgagtgtg agccggacga cctggacctg gattatggcg actccgtgga ggccggacac 3901 gtctttgatg atttctcaag cgacgccgtt ttcatccagc tcgatgacat gagctcgcca 3961 ccttctcccg aaagcacaga ctcttcccca gagcgagact tcccactgaa gcctgcgttg 4021 cccccagcca gcctggccgt ggccgccatc cagagggagg tgtcattgat gcacgatgaa 4081 gacccttcgc agcccccacc cctgccagag ggcacccagg agccacattt gctcaggccg 4141 gacgcggctg agaaggctga ggcacccagt tccccggatg tggcgcctgc ggggaaggaa 4201 gacagcccct ctgcgagtgg gagggtacag gaggcagccc ggcctgagga ggtggtttcg 4261 cagacccccc tgctgcggtc cagagccctg gtgaagcggg tcacctggaa cctgcaggag 4321 tcggagagca gcgcccccgc cgaggacaga gccccccggg caccacttca caggccacag 4381 aagccccgag aaggagcctg ggacatggag gatgtggccc ccacaggggt caggcaggcg 4441 ttctccgagc tgccctttcc cagtcacgtg cttccggaac ccgggttccc agacacagac 4501 ccctctcagg tttacagccc cggcctgccg cctgccccgg cccagccctc aagcatccca 4561 ccctgcgcac tggtcagcca gcccacggtc cagttcatcc ttcaggggag cctgccgcta 4621 gtgggctgtg gggcagcaca gaccctggcc ccagtgcccg ctgccctgac cccagcctca 4681 gagccagcca gtcaagccac tgcagccagc aactcggagg agaagacccc ggcccccagg 4741 ctagctgcgg agaaaaccaa gaaggaggag tacatgaaga agctgcacat gcaggagcgt 4801 gctgtggagg aggtgaagct ggccatcaag cccttctacc agaagaggga ggtgaccaag 4861 gaggagtaca aggacatcct gcgcaaggcc gtgcagaaga tctgccacag caagagtgga 4921 gagatcaacc ccgtgaaggt ggccaacctg gtgaaggcgt acgtggacaa gtacaggcac 4981 atgcgcaggc acaagaaacc agaggccggg gaggagccgc ccacgcaggg ggccgagggc 5041 tgaggccagg caatcacggg ctatgccggg ggagctgtcg ggagtggcgg gaatcggggc 5101 catgcccggg gagctgtcgg gagtggcggg aattggggcc atgcccgggg agctgtcggg 5161 agtggcggga aatggggggc atcagcatgc ctgccgtcgg gttcctgcgc tgacacctgg 5221 tctgtgcacc //