LOCUS BC136603 5352 bp mRNA linear HUM 11-FEB-2009
DEFINITION Homo sapiens synaptojanin 1, mRNA (cDNA clone MGC:168216
IMAGE:9020593), complete cds.
ACCESSION BC136603
VERSION BC136603.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5352)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 5352)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-MAR-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Ambion
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 13 Row: O Column: 21
single stranded.
FEATURES Location/Qualifiers
source 1..5352
/db_xref="H-InvDB:HIT000500613"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:168216 IMAGE:9020593"
/tissue_type="Brain, PCR rescued clones"
/clone_lib="NIH_MGC_309"
/note="Vector: pCR-XL-TOPO with reversed insert; Clone
identification sequence tag: GTAGTACA"
gene 1..5352
/gene="SYNJ1"
/gene_synonym="INPP5G"
/db_xref="GeneID:8867"
/db_xref="HGNC:HGNC:11503"
/db_xref="MIM:604297"
CDS 22..3816
/gene="SYNJ1"
/gene_synonym="INPP5G"
/codon_start=1
/product="SYNJ1 protein"
/protein_id="AAI36604.1"
/db_xref="GeneID:8867"
/db_xref="HGNC:HGNC:11503"
/db_xref="MIM:604297"
/translation="MAFSKGFRIYHKLDPPPFSLIVETRHKEECLMFESGAVAVLSSA
EKEAIKGTYSKVLDAYGLLGVLRLNLGDTMLHYLVLVTGCMSVGKIQESEVFRVTSTE
FISLRIDSSDEDRISEVRKVLNSGNFYFAWSASGISLDLSLNAHRSMQEQTTDNRFFW
NQSLHLHLKHYGVNCDDWLLRLMCGGVEIRTIYAAHKQAKACLISRLSCERAGTRFNV
RGTNDDGHVANFVETEQVVYLDDSVSSFIQIRGSVPLFWEQPGLQVGSHRVRMSRGFE
ANAPAFDRHFRTLKNLYGRQIIVNLLGSKEGEHMLSKAFQSHLKASEHAADIQMVNFD
YHQMVKGGKAEKLHSVLKPQVQKFLDYGFFYFNGSEVQRCQSGTVRTNCLDCLDRTNS
VQAFLGLEMLAKQLEALGLAEKPQLVTRFQEVFRSMWSVNGDSISKIYAGTGALEGKA
KAGKLKDGARSVTRTIQNNFFDSSKQEAIDVLLLGNTLNSDLADKARALLTTGSLRAS
SKVLKSMCENFYKYSKPKKIRVCVGTWNVNGGKQFRSIAFKNQTLTDWLLDAPKLAGI
QEFQDKRSKPTDIFAIGFEEMVELNAGNIVSASTTNQKLWAVELQKTISRDNKYVLLA
SEQLVGVCLFVFIRPQHAPFIRDVAVDTVKTGMGGATGNKGAVAIRMLFHTTSLCFVC
SHFAAGQSQVKERNEDFIEIARKLSFPMGRMLFSHDYVFWCGDFNYRIDLPNEEVKEL
IRQQNWDSLIAGDQLINQKNAGQVFRGFLEGKVTFAPTYKYDLFSDDYDTSEKCRTPA
WTDRVLWRRRKWPFDRSAEDLDLLNASFQDESKILYTWTPGTLLHYGRAELKTSDHRP
VVALIDIDIFEVEAEERQNIYKEVIAVQGPPDGTVLVSIKSSLPENNFFDDALIDELL
QQFASFGEVILIRFVEDKMWVTFLEGSSALNVLSLNGKELLNRTITIALKSPDWIKNL
EEEMSLEKISIALPSSTSSTLLGEDAEVAADFDMEGDVDDYSAEVEELLPQHLQPSSS
SGLGTSPSSSPRTSPCQSPTISEGPVPSLPIRPSRAPSRTPGPPSAQSSPIDAQPATP
LPQKDPAQPLEPKRPPPPRPVAPPTRPAPPQRPPPPSGRSQPSPQAGLAGPGPAGYST
ARPTIPPRAGVISAPQSHARASAGRLTPESQSKTSETSKGSTFLPEPLKPQAAFPPQS
SLPPPAQRLQEPLVPVAAPMPQSGPQPNLETPPQPPPRSRSSHSLPSEASSQPQQEQP
SG"
BASE COUNT 1560 a 1148 c 1160 g 1484 t
ORIGIN
1 gctgcctccg aagaaaggag aatggcgttc agtaaaggat tccggatcta tcacaaattg
61 gatcccccac ctttcagcct catagtggaa actaggcata aggaagaatg tctcatgttc
121 gagtctgggg ctgtcgctgt gctctcatct gcagaaaaag aggcaatcaa gggtacatac
181 tccaaagtac tggatgcata tggactctta ggtgttctgc ggttaaatct tggtgatact
241 atgttacatt atctggtcct agtcactgga tgtatgtctg ttggaaaaat tcaagaatct
301 gaagttttcc gagttacttc cactgagttt atatcactgc gaatcgattc ttcagatgag
361 gatcgcattt cagaagtgcg gaaagttttg aattcaggaa acttttattt tgcatggtct
421 gcatctggca tcagtttaga tttgagtctt aatgcgcatc gtagcatgca agaacagaca
481 actgataata gatttttctg gaatcagtct ttgcatttgc atctcaaaca ctatggcgtg
541 aattgtgatg actggttatt acgtcttatg tgtggaggag tagaaatcag aacaatttat
601 gctgctcata aacaggcgaa ggcttgcctc atttcaagat taagctgtga acgagctggg
661 accaggttta atgtccgggg aacaaatgat gatggtcatg ttgccaattt tgtagaaaca
721 gaacaggttg tgtacttaga tgactcagtt tcttccttca tacaaatccg aggatctgtt
781 ccattgttct gggagcaacc agggttgcaa gtgggatctc atcgtgtccg tatgtcaagg
841 ggatttgaag ccaatgcacc tgcttttgac aggcatttta gaacacttaa gaacttatat
901 ggtagacaaa taatagtaaa tttgcttgga tctaaggaag gtgaacatat gctaagtaaa
961 gctttccaga gtcatttgaa agcttctgaa catgctgctg atatccagat ggtgaatttt
1021 gactatcatc aaatggttaa gggaggaaag gcagaaaaat tacatagtgt tcttaaacct
1081 caagtccaga agtttctaga ttatggattt ttttatttca atggaagtga agttcaaaga
1141 tgccagagtg gtacagttcg aacaaactgc ttggattgtc ttgatagaac aaatagtgtg
1201 caggcatttc ttggcttaga gatgctagct aaacagttgg aagctcttgg tttagctgaa
1261 aagcctcagt tggtgactcg ctttcaagaa gtttttcggt caatgtggtc cgtgaatggt
1321 gattcaatca gtaagatata tgcaggaact ggagctcttg aagggaaagc gaaggctgga
1381 aagttaaaag atggtgctcg ctctgttacc cgaacaattc agaataactt ctttgacagc
1441 tccaagcaag aggccattga tgttttgcta ctgggaaata ctctgaatag tgatttagct
1501 gacaaagctc gagcactttt aactactgga agtttgcgtg catcttctaa agtactaaag
1561 agcatgtgtg agaatttcta caaatattca aagcctaaga aaattcgagt atgtgtcgga
1621 acctggaatg tgaatggtgg gaagcaattt cgcagcatag cttttaagaa tcagacactc
1681 actgactggc ttcttgatgc acccaagtta gctggcatcc aggagtttca agataaaaga
1741 agtaagccaa ctgatatatt tgcaattggt tttgaagaaa tggtagaatt gaatgctgga
1801 aacattgtga gtgcaagcac aacaaatcag aagctctggg ctgtagaact tcagaagaca
1861 atctccagag acaacaagta tgtgctgctg gcttctgaac agttggtggg cgtctgtttg
1921 tttgttttta tcagaccaca gcatgctcct tttatcaggg atgttgcagt tgatactgtg
1981 aagactggaa tgggaggtgc aactggaaat aagggagcag ttgcaatccg aatgctcttc
2041 catacaacca gcctttgctt cgtctgtagc cactttgctg cagggcagtc acaagtcaaa
2101 gaaagaaatg aagattttat agaaatagca cgaaaattga gttttcctat gggaaggatg
2161 ctattttccc atgactatgt attttggtgt ggtgatttca actatcgaat cgatctccct
2221 aacgaagaag ttaaagagct cataagacag caaaattggg attctcttat agcaggagat
2281 caacttatca atcagaaaaa tgctggacag gtttttagag gatttttaga aggaaaggta
2341 acctttgctc cgacatataa gtatgacttg ttttctgacg actatgacac cagtgaaaag
2401 tgtcgcaccc ctgcctggac agaccgtgtc ctttggagaa ggaggaaatg gccttttgat
2461 agatcagctg aagatctaga tcttctaaat gctagttttc aagatgaaag caaaattctg
2521 tacacgtgga ctccaggcac tttgctgcac tatggaagag ctgagctgaa gacttctgac
2581 cacaggcctg tcgttgccct gattgatata gatatatttg aagttgaagc tgaagagagg
2641 caaaacattt ataaagaagt aattgcagtt cagggtccac cagatggtac agtattggtc
2701 tcaatcaaaa gttctttacc agaaaataat ttttttgatg atgccttgat tgatgagctt
2761 ctgcagcagt ttgcaagttt tggtgaagtt atacttataa gatttgtaga agataaaatg
2821 tgggttacat ttttggaggg aagctctgcc ttgaatgttc tgagcctaaa tggtaaagag
2881 ttattgaatc ggactataac tattgcttta aaaagtccag actggatcaa aaatttggaa
2941 gaagaaatga gtttagagaa aattagcatt gcattgccat catcaacaag ctctaccctg
3001 cttggtgaag atgcagaggt tgcagcagat tttgatatgg aaggtgatgt tgatgactat
3061 agtgctgaag tggaggaact tcttcctcag catctccagc catcttcaag ttccggcctt
3121 ggtacttccc ccagctcttc accccgaact agtccctgcc agtcacctac aatatcagag
3181 ggtcctgtac cttcccttcc catcagacca agccgagcac cgtcaagaac tcctgggcct
3241 cccagtgcac agagttctcc tattgacgcg cagccagcaa cgccgctgcc gcagaaagac
3301 cccgcccagc ccttggagcc caagcggccg ccgccgcccc gcccggtcgc ccctcccaca
3361 cgcccggctc ccccacagag acctcctccg ccttcaggac gcagtcagcc ttcacctcaa
3421 gcaggacttg caggcccagg acctgctgga tacagtacag ccagaccgac gattcctcct
3481 cgtgctggag ttatcagtgc cccacagagc cacgcgcggg catctgctgg aagactgact
3541 cctgaaagcc aaagcaaaac atcagaaacg tcgaaaggtt caactttcct tcctgaacca
3601 ctgaagcctc aggctgcttt tcctccgcag tcttctttgc ccccgcctgc tcaaaggttg
3661 caagagcctc ttgtccctgt ggcagcacct atgcctcagt ctggccccca gccaaatttg
3721 gaaaccccac cacaaccacc acctcgaagc aggtcatccc atagcttgcc ttcagaagct
3781 tcctcacaac cgcaacagga gcaaccatca gggtaacagg taaaaacaaa tggaatctct
3841 gatggcaaaa gagaatcacc attaaagatt gacccatttg aagatctgtc atttaatctg
3901 cttgctgtat caaaggctca gctatctgtt caaacgtcac ctgttcccac cccagaccca
3961 aagaggttga ttcagttgcc ttctgcaacg caaagtaatg ttaatacttt gagttctgta
4021 agttgcatgc caacaatgcc tccaattcca gctcggagtc aatcccagga aaatatgcga
4081 agttctccaa acccatttat tactggcttg accaggacaa atcctttcag tgacaggact
4141 gctgctcctg gaaacccatt tagagccaag tctgaagaat cagaggcaac ttcatggttc
4201 tccaaagaag agcccgttac tatcagtcct ttcccttctc tgcagcctct tggtcataac
4261 aaaagcaggg cttcatcttc acttgatggc tttaaggaca gttttgatct acagggccag
4321 tctacattaa aaattagcaa cccgaaagga tgggtaacct tcgaggaaga agaggatttt
4381 ggtgtgaaag ggaagtcaaa gtcagcttgt tcagacttac tgggtaatca gccaagttca
4441 ttttctggct ccaacctgac attgaatgat gactggaata aaggtacaaa tgtctccttc
4501 tgtgtgttgc cgtcaagaag acctcctcca cctcctgtcc ctctgctccc gcccggcacc
4561 agccctccag tagatccttt cacgaccttg gcctctaagg cttcacccac actggacttt
4621 acagaaagat aacgccatgc aatagaaaac agtgggtact tgcttttggc aggatagagc
4681 taagagaatt gggcattagt atttcattat gtgcaataag tcattgtaag tgcactgata
4741 tcttcacaaa acaccactat ttgatgtgta cagagttgga ctatgtgtat attggaaata
4801 aggaaaaacc cttctcattg ttaactggag ttttgatgta tttctctttg gatgaatagg
4861 agacagtagt agccataaaa agtacttata ctttagaaaa cagtccttat tcagaaactt
4921 ttcggtcagt cttctgaaga atctcaaaaa gcccacccaa ctttcagctg acatttccac
4981 cagccctctc atacttgtta acaattggta tctttgagta tttaccaaag agctgccaag
5041 gttacagtga acagagtttt gaaaggcatt gctttaaagg aaaaaagtat aggtatgtgt
5101 acatatataa tacatacaaa cacatgtact tctgtataca tttacatatt tttacaattc
5161 atactttaat ttctaggcta taactcagac caaattatac ctaaaagttc caacaaagtc
5221 cctttttcaa tatcacatta ccaaaaagat ggctgcaaat gtaatttgga cctttcatta
5281 attttgtttt caaaactaga ataatctcac cacagaatca gaattttcta ccgttccaca
5341 cccaacccct tc
//