LOCUS BC136573 1944 bp mRNA linear HUM 12-MAY-2008
DEFINITION Homo sapiens iroquois homeobox 6, mRNA (cDNA clone MGC:168186
IMAGE:9020563), complete cds.
ACCESSION BC136573
VERSION BC136573.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1944)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1944)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-MAR-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: LLDM Plate: 670 Row: n Column: 17.
FEATURES Location/Qualifiers
source 1..1944
/db_xref="H-InvDB:HIT000500586"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:168186 IMAGE:9020563"
/tissue_type="Pooled, cerebellum, kidney, placenta,
testis, lung, colon, liver, heart, thyroid, bladder,
uterus, PCR rescued clones"
/clone_lib="NIH_MGC_361"
/lab_host="DH10B"
/note="Vector: pCR4-TOPO; Clone identification sequence
tag: CCCAGCTT"
gene 1..1944
/gene="IRX6"
/gene_synonym="IRX-3"
/gene_synonym="IRXB3"
/db_xref="GeneID:79190"
/db_xref="HGNC:HGNC:14675"
/db_xref="MIM:606196"
CDS 275..1615
/gene="IRX6"
/gene_synonym="IRX-3"
/gene_synonym="IRXB3"
/codon_start=1
/product="iroquois homeobox 6"
/protein_id="AAI36574.1"
/db_xref="GeneID:79190"
/db_xref="HGNC:HGNC:14675"
/db_xref="MIM:606196"
/translation="MSFPHFGHPYRGASQFLASASSSTTCCESTQRSVSDVASGSTPA
PALCCAPYDSRLLGSARPELGAALGIYGAPYAAAAAAQSYPGYLPYSPEPPSLYGALN
PQYEFKEAAGSFTSSLAQPGAYYPYERTLGQYQYERYGAVELSGAGRRKNATRETTST
LKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWAPKNKG
GEERKAEGGEEDSLGCLTADTKEVTASQEARGLRLSDLEDLEEEEEEEEEAEDEEVVA
TAGDRLTEFRKGAQSLPGPCAAAREGRLERRECGLAAPRFSFNDPSGSEEADFLSAET
GSPRLTMHYPCLEKPRIWSLAHTATASAVEGAPPARPRPRSPECRMIPGQPPASARRL
SVPRDSACDESSCIPKAFGNPKFALQGLPLNCAPCPRRSEPVVQCQYPSGAEAG"
BASE COUNT 416 a 611 c 590 g 327 t
ORIGIN
1 ttgggaaccc gcatcttctt ccttcccctg cccatccatg ggcccttctg tcttccggac
61 cccacgggcc ggaggggcgc cttccggagc gcagggctcg gcagccgggc tgccctcggc
121 tctgcctcca ctggggccaa ccaggcgaag gaaccggcgc tgggcatccg cagcggtgta
181 aggaactgag acacctcact gctgggggcg cggaacagct gggctgagac gggaactcga
241 cagggaagag agagacgggc cagggacagc caccatgtcc ttcccacact ttggacaccc
301 gtaccgcggc gcttcccagt ttctggcgtc ggcaagttcc agcaccacat gctgcgaatc
361 tacccaacgc tctgtctcag atgtggcatc aggctccacc ccagcgcccg ctctctgctg
421 cgcaccctac gatagtcgac tgctgggcag tgcgcgaccg gagctgggcg ccgccttggg
481 catctatgga gcaccctatg cggccgctgc agctgcccag agctaccctg gctacctgcc
541 ctatagccca gagcccccct cactgtatgg ggcactgaat ccacagtatg aatttaagga
601 ggctgcaggg agttttacat ccagcctggc acaaccagga gcctattatc cctatgagcg
661 gactctgggg cagtaccaat atgaacggta tggcgcagtg gaattgagtg gcgccggtcg
721 ccgaaagaac gcgacccggg agaccaccag tacactcaag gcctggctca acgagcaccg
781 caaaaacccc taccccacta agggtgagaa gatcatgctg gccatcatca ccaagatgac
841 cctcacccag gtgtccacct ggttcgccaa cgcacgccgg cgcctcaaga aagagaacaa
901 aatgacatgg gcgcccaaga acaaaggtgg ggaggagagg aaggcagagg gaggagagga
961 ggactcacta ggctgcctaa ctgctgacac caaagaagtt actgctagcc aggaggcccg
1021 ggggctccgg ctgagtgacc tggaagacct ggaggaagag gaggaggagg aggaggaagc
1081 tgaagacgag gaggtagtgg ccacagctgg ggacaggctg acggagttcc gaaagggcgc
1141 gcagtcactg cctgggccgt gcgctgcagc tcgagagggc cgattggagc gcagggagtg
1201 cggcctggct gcgccccgct tctccttcaa tgacccttcc ggatcggaag aagctgactt
1261 cctctcggcg gagacaggca gccctaggtt gaccatgcac tacccatgct tggagaaacc
1321 gcgcatctgg tctctggcgc acaccgcgac agccagcgct gttgaaggtg cacccccagc
1381 ccggcctagg ccacgaagtc ctgagtgccg tatgattcct ggacagcctc ctgcctctgc
1441 ccggcgactc tcagtcccca gagactccgc gtgcgacgag tcttcctgca tacccaaagc
1501 ctttggaaac cccaagtttg ccctgcaggg actaccgctg aactgtgcgc cgtgcccgcg
1561 gaggagcgag cctgtagtgc agtgccagta cccgtctgga gcagaagcag gttagcgcaa
1621 tggctgcgat ttgcgaaaga atcttggaaa tgggccccac gtttcgaatt catctccagg
1681 ttaagaagct gccagacctt gccagggacc aggagctctc actttgccta agagacagac
1741 acacagaaac cctcctagca gctgtccttg cacgcagagc tggggtggtg ggccgacttg
1801 aaccttagca gtccccacgg gagatggcag ggcaccttgg ggaaggccaa gtgggaagct
1861 gggaggctgc cccacccacc gactctacca agtctctctt cctcctgtgg attcagcaag
1921 gcttcctctc ctgctcaccc ctgt
//