LOCUS BC136408 1509 bp mRNA linear HUM 11-FEB-2009
DEFINITION Homo sapiens mucosal vascular addressin cell adhesion molecule 1,
mRNA (cDNA clone MGC:168019 IMAGE:9020396), complete cds.
ACCESSION BC136408
VERSION BC136408.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1509)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1509)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-MAR-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Ambion
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: LLDM Plate: 670 Row: g Column: 18
single stranded.
FEATURES Location/Qualifiers
source 1..1509
/db_xref="H-InvDB:HIT000500430"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:168019 IMAGE:9020396"
/tissue_type="Testicle, PCR rescued clones"
/clone_lib="NIH_MGC_382"
/lab_host="DH10B"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: TACTATGG"
gene 1..1509
/gene="MADCAM1"
/gene_synonym="MACAM1"
/db_xref="GeneID:8174"
/db_xref="HGNC:HGNC:6765"
/db_xref="MIM:102670"
CDS 47..1267
/gene="MADCAM1"
/gene_synonym="MACAM1"
/codon_start=1
/product="MADCAM1 protein"
/protein_id="AAI36409.1"
/db_xref="GeneID:8174"
/db_xref="HGNC:HGNC:6765"
/db_xref="MIM:102670"
/translation="MDFGLALLLAGLLGLLLGQSLQVKPLQVEPPEPVVAVALGASRQ
LTCRLACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRT
FQHTVQLLVYAFPDQLTVSPAALVPGDPEVACTAHKVTPVDPNALSFSLLVGGQELEG
AQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGTPVPPALYCQATMRLPGLELSHR
QAIPVLHSPTSPEPPDTTSPEPPNTTSPESPDTTSPESPDTTSQEPPDTTSQEPPDTT
SQEPPDTTSPEPPDKTSPEPAPQQGSTHTPRSPGSTRTRRPEISQAGPTQGEVIPTGS
SKPAGDQLPAALWTSSAVLGLLLLALPTYHLWKRCRHLAEDDTHPPASLRLLPQVSAW
AGLRGTGQVGISPS"
BASE COUNT 242 a 584 c 446 g 237 t
ORIGIN
1 ctatttaagc ggcttccccg cggcctcggg acagagggga ctgagcatgg atttcggact
61 ggccctcctg ctggcggggc ttctggggct cctcctcggc cagtccctcc aggtgaagcc
121 cctgcaggtg gagcccccgg agccggtggt ggccgtggcc ttgggcgcct cgcgccagct
181 cacctgccgc ctggcctgcg cggaccgcgg ggcctcggtg cagtggcggg gcctggacac
241 cagcctgggc gcggtgcagt cggacacggg ccgcagcgtc ctcaccgtgc gcaacgcctc
301 gctgtcggcg gccgggaccc gcgtgtgcgt gggctcctgc gggggccgca ccttccagca
361 caccgtgcag ctccttgtgt acgccttccc ggaccagctg accgtctccc cagcagccct
421 ggtgcctggt gacccggagg tggcctgtac ggcccacaaa gtcacgcccg tggaccccaa
481 cgcgctctcc ttctccctgc tcgtcggggg ccaggaactg gagggggcgc aagccctggg
541 cccggaggtg caggaggagg aggaggagcc ccagggggac gaggacgtgc tgttcagggt
601 gacagagcgc tggcggctgc cgcccctggg gacccctgtc ccgcccgccc tctactgcca
661 ggccacgatg aggctgcctg gcttggagct cagccaccgc caggccatcc ccgtcctgca
721 cagcccgacc tccccggagc ctcccgacac cacctccccg gagcctccca acaccacctc
781 cccggagtct cccgacacca cctccccgga gtctcccgac accacctccc aggagcctcc
841 cgacaccacc tcccaggagc ctcccgacac cacctcccag gagcctcccg acaccacctc
901 cccggagcct cccgacaaga cctccccgga gcccgccccc cagcagggct ccacacacac
961 ccccaggagc ccaggctcca ccaggactcg ccgccctgag atctcccagg ctgggcccac
1021 gcagggagaa gtgatcccaa caggctcgtc caaacctgcg ggtgaccagc tgcccgcggc
1081 tctgtggacc agcagtgcgg tgctgggact gctgctcctg gccttgccca cgtatcacct
1141 ctggaaacgc tgccggcacc tggctgagga cgacacccac ccaccagctt ctctgaggct
1201 tctgccccag gtgtcggcct gggctgggtt aagggggacc ggccaggtcg ggatcagccc
1261 ctcctgagtg gccagccttt ccccctgtga aagcaaaata gcttggaccc cttcaagttg
1321 agaactggtc agggcaaacc tgcctcccat tctactcaaa gtcatccctc tgctcacaga
1381 gatggatgca tgttctgatt gcctctttgg agaagctcat cagaaactca aaagaaggcc
1441 actgtttgtc tcacctaccc atgacctgaa gcccctccct gagtggtccc cacctttctg
1501 gacggaacc
//