LOCUS BC136385 2276 bp mRNA linear HUM 11-FEB-2009
DEFINITION Homo sapiens collagen, type XIII, alpha 1, mRNA (cDNA clone
MGC:167995 IMAGE:9020372), complete cds.
ACCESSION BC136385
VERSION BC136385.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2276)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2276)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-MAR-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Ambion
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: LLDM Plate: 670 Row: f Column: 18
single stranded.
FEATURES Location/Qualifiers
source 1..2276
/db_xref="H-InvDB:HIT000500407"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:167995 IMAGE:9020372"
/tissue_type="Testicle, PCR rescued clones"
/clone_lib="NIH_MGC_382"
/lab_host="DH10B"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: CTGCCGTC"
gene 1..2276
/gene="COL13A1"
/gene_synonym="COLXIIIA1"
/db_xref="GeneID:1305"
/db_xref="HGNC:HGNC:2190"
/db_xref="MIM:120350"
CDS 307..2244
/gene="COL13A1"
/gene_synonym="COLXIIIA1"
/codon_start=1
/product="COL13A1 protein"
/protein_id="AAI36386.1"
/db_xref="GeneID:1305"
/db_xref="HGNC:HGNC:2190"
/db_xref="MIM:120350"
/translation="MVAERTHKAAATGARGPGELGAPGTVALVAARAERGARLPSPGS
CGLLTLALCSLALSLLAHFRTAELQARVLRLEAERGEQQMETAILGRVNQLLDEKWKL
HSRRRREAPKTSPGCNCPPGPPGQPGTRGFPGFPGPIGLDGKPGHPGPKGDMGLTGPP
GQPGPQGQKGEKGQCGEYPHRLLPLLNSVRLAPPPVIKRRTFQGEQSQASIQGPPGPP
GPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKG
APGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPG
LPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKGSKGEPGKGEMVDYNGN
INEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGD
MGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPVPGLPGPEGPPGPPG
LQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGP
AGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSRGPKGDKGDQGAP
GLDAPCPLGEDGLPVQGCWNK"
BASE COUNT 513 a 626 c 789 g 348 t
ORIGIN
1 ggaaagactg ggcggagaga aggagagccg gtcagattcc cctaactttc ctggacttgg
61 aacgttcttc gaaataactt ttttctcacc taggtgtacc ccaattaccg ctggttgtgc
121 tttttcggca cttcctctcc tactgctaat ttttccgtcc tctttgccgg gagcagcgga
181 aagggacgtt ttccagcgat acaagccctt tccccctgcc ccgcagtttg gatagagcct
241 tttggcagcg gctgtcgcct ttatttattc tatttattta tttattggtt ctcaagacgc
301 gagaggatgg tagcggagcg cacccacaaa gcggcagcca ccggtgcccg cggccctggg
361 gagttgggcg cgcccgggac ggtggctctg gtggcggcgc gggcggagcg cggcgcacgg
421 ctgccgagtc cagggtcgtg cgggctgctg acgctggccc tctgctcgct ggcactcagc
481 ctgctcgccc actttcggac ggccgagctg caggcccggg tgctgcgcct ggaagcggag
541 cgcggggagc agcaaatgga gacagctatt ttgggacgag tcaatcaact gctggacgag
601 aaatggaagc tccactcaag gaggcgccgg gaggccccaa agacatctcc aggatgtaac
661 tgcccaccag gacctcctgg tcaaccagga actagaggtt tccctggatt tccgggtccc
721 attgggctgg acggcaaacc gggccaccca ggaccaaagg gcgacatggg tctgacgggt
781 cccccaggac agccgggacc ccagggacaa aaaggagaaa agggtcagtg tggagagtac
841 ccacaccggc tgctgcctct cctcaattca gtgcgactgg ctccaccccc ggtcataaaa
901 aggcggacat tccagggcga acagagccag gccagcatcc aaggtccacc agggccccca
961 ggcccccctg gaccaagtgg acctctgggg cacccaggac tgccagggcc tatggggcca
1021 cctggcttac ctgggcctcc tggaccaaag ggagacccag ggatccaggg ctaccacggc
1081 cggaagggag aacggggcat gccagggatg ccaggcaagc atggagccaa gggggcgccc
1141 ggaattgccg tggctgggat gaagggtgag ccagggatcc caggaaccaa gggtgagaag
1201 ggggctgaag gctcccctgg gcttcctggc ctcctggggc agaagggaga gaaaggcgat
1261 gctggcaact ccattggagg aggcagaggg gaacctggcc ctccagggct ccctgggccc
1321 ccagggccaa agggagaagc aggtgtcgat ggccaggttg gccccccagg gcagccagga
1381 gacaaggggg agcgtggagc agctggagaa cagggaccag atggccccaa gggctccaag
1441 ggagaaccag ggaaaggaga gatggtggat tacaatggaa acatcaatga ggctctccag
1501 gagatccgga cgctggcctt gatggggcct cctggtcttc ctgggcaaat tggcccacct
1561 ggagctccag ggattccagg ccagaagggg gagattggac tgccaggccc tccaggacac
1621 gatggggaaa agggacctcg cggtaaacca ggagacatgg gccctcctgg tccccaaggc
1681 cccccaggaa aggatggacc tccaggagtg aagggagaaa acgggcaccc agggagccca
1741 ggagagaagg gggaaaaagg ggagacagga caagcaggct caccggttcc tgggctgcca
1801 gggccagagg ggcctcccgg acctccgggg ctccaaggtg ttcctggacc aaagggggaa
1861 gcaggactag atggagcaaa aggagagaaa ggcttccagg gagaaaaagg agaccgtggt
1921 cccctgggac tacccggagc ttcaggtttg gacggcaggc ctgggccacc gggtactcca
1981 ggaccaattg gagttccagg cccagcggga ccaaagggcg agaggggcag caaaggagac
2041 cctgggatga caggaccaac gggagcagct gggcttcctg gtttacatgg accacccggg
2101 gacaagggaa accgggggga gagggggaag aaaggctcta gagggcctaa aggggataag
2161 ggagaccaag gagcgcctgg attagatgcc ccctgcccat tgggcgaaga tggcttacca
2221 gtccaaggct gctggaacaa gtgatgcctc taaccttgga ttggcctgtg tgtgtg
//