LOCUS BC136340 3031 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens TAF5 RNA polymerase II, TATA box binding protein
(TBP)-associated factor, 100kDa, mRNA (cDNA clone MGC:167950
IMAGE:9020327), complete cds.
ACCESSION BC136340
VERSION BC136340.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3031)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3031)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-MAR-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Ambion
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 16 Row: N Column: 2.
FEATURES Location/Qualifiers
source 1..3031
/db_xref="H-InvDB:HIT000500366"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:167950 IMAGE:9020327"
/tissue_type="Testicle, PCR rescued clones"
/clone_lib="NIH_MGC_382"
/lab_host="DH10B"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: TGTAGGGG"
gene 1..3031
/gene="TAF5"
/gene_synonym="TAFII100"
/db_xref="GeneID:6877"
/db_xref="HGNC:HGNC:11539"
/db_xref="MIM:601787"
CDS 19..2256
/gene="TAF5"
/gene_synonym="TAFII100"
/codon_start=1
/product="TAF5 protein"
/protein_id="AAI36341.1"
/db_xref="GeneID:6877"
/db_xref="HGNC:HGNC:11539"
/db_xref="MIM:601787"
/translation="MAALAEEQTEVAVKLEPEGPPTLLPPQAGDGAGEGSGGTTNNGP
NGGGGNVAASSSTGGDGGTPKPTVAVSAAAPAGAAPVPAAAPDAGAPHDRQTLLAVLQ
FLRQSKLREAEEALRREAGLLEEAVAGSGAPGEVDSAGAEVTSALLSRVTASAPGPAA
PDPPGTGASGATVVSGSASGPAAPGKVGSVAVEDQPDVSAVLSAYNQQGDPTMYEEYY
SGLKHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQ
DDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIVQ
EHLYIDIFDGMPRSKQQIDAMVGSLAGEAKREANKSKVFFGLLKEPEIEVPLDDEDEE
GENEEGKPKKKKPKKDSIGSKSKKQDPNAPPQNRIPLPELKDSDKLDKIMNMKETTKR
VRLGPDCLPSICFYTFLNAYQGLTAVDVTDDSSLIAGGFADSTVRVWSVTPKKLRSVK
QASDLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGASFSPDRLWATDHYQPLR
IFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSP
NGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRL
WDAIKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPVVHLHFTRRNLVLAAG
AYSPQ"
BASE COUNT 845 a 653 c 758 g 775 t
ORIGIN
1 aggtggctca gccgcaagat ggcggcgctg gcggaggagc agacggaggt ggcggtcaag
61 ctagagcctg agggaccgcc aacgctgcta cctccgcagg cgggggacgg cgcaggcgag
121 ggtagcggcg gcactaccaa caacggcccc aacggcggcg gcgggaacgt tgcggcgtcg
181 tcgtccactg gcggggatgg cgggaccccc aagcccacgg tggctgtctc cgccgctgcc
241 ccggcggggg cggccccggt gcccgccgct gctccggacg ccggcgctcc gcatgaccga
301 cagactctac tggccgtgct gcagttccta cggcagagca aactccgcga ggccgaagag
361 gcgctgcgcc gtgaggccgg gctgctggag gaggcagtgg cgggctccgg agccccggga
421 gaggtggaca gcgccggcgc tgaggtgacc agcgcgcttc tcagccgggt gaccgcctcg
481 gcccctggcc ctgcggcccc cgaccctccg ggcactggcg cttcgggggc cacggtcgtc
541 tcaggttcag cctcaggtcc tgcggctccg ggtaaagttg gaagtgttgc tgtggaagac
601 cagccagatg tcagtgccgt gttgtcagcc tacaaccaac aaggagatcc cacaatgtat
661 gaagaatact atagtggact gaaacacttc attgaatgtt ccctggactg ccatcgggca
721 gagttgtccc aactttttta tcctctgttt gtgcacatgt acttggagct agtctacaat
781 caacatgaga atgaagcaaa gtcattcttt gagaagttcc atggagatca ggaatgttat
841 taccaggatg acctacgagt attatctagt cttaccaaaa aggaacacat gaaagggaat
901 gagaccatgt tggattttcg aacaagtaaa tttgttctgc gtatttcccg tgactcgtac
961 caactcttga agaggcatct tcaggagaaa cagaacaatc agatatggaa catagttcag
1021 gagcacctct acattgacat ctttgatggg atgccgcgta gtaagcaaca gatagatgcg
1081 atggtgggaa gtttggcagg agaggctaaa cgagaggcaa acaaatcaaa ggtatttttt
1141 ggtttattaa aagaaccaga aattgaggta cctttggatg acgaggatga agagggagaa
1201 aatgaagaag gaaaacctaa aaagaagaag cctaaaaaag atagtattgg atccaaaagc
1261 aaaaaacaag atcccaatgc tccacctcag aacagaatcc ctcttcctga gttgaaagat
1321 tcagataagt tggataagat aatgaatatg aaagaaacca ccaaacgagt gcgccttggg
1381 ccggactgct taccctccat ttgtttctat acatttctca atgcttacca gggtctcact
1441 gcagtggatg tcactgatga ttctagtctg attgctggag gttttgcaga ttcaactgtc
1501 agagtgtggt cggtaacacc caaaaagctt cgtagtgtca aacaagcatc agatcttagt
1561 cttatagaca aagaatcaga tgatgtctta gaaagaatca tggatgagaa aacagcaagt
1621 gagttgaaga ttttgtatgg tcacagtggg cctgtctacg gagccagctt cagtccggat
1681 aggctctggg ctacagacca ctatcagcct ttaagaatat ttgccggcca tcttgctgat
1741 gtgaattgta ccagattcca tccaaattct aattatgttg ctacgggctc tgcagacaga
1801 actgtgcggc tctgggacgt cctgaatggt aactgtgtaa ggatcttcac tggacacaag
1861 ggaccaattc attccttgac attttctccc aatgggagat tcctggctac aggagcaaca
1921 gatggcagag tgcttctttg ggatattgga catggtttga tggttggaga attaaaaggc
1981 cacactgata cagtctgttc acttaggttt agtagagatg gtgaaatttt ggcatcaggt
2041 tcaatggata atacagttcg attatgggat gctatcaaag cctttgaaga tttagagacc
2101 gatgacttta ctacagccac tgggcatata aatttacctg agaattcaca ggagttattg
2161 ttgggaacat atatgaccaa atcaacacca gttgtacacc ttcattttac tcgaagaaac
2221 ctggttctag ctgcaggagc ttatagtcca caataaacca tcggtattaa agaccttttg
2281 gaagctactg tttttaaaaa gggagactaa aagcaaatac ctcagtgatt aatatttaag
2341 ctacagagaa tgtttttgtc tatatggatc tggaagtatg ctgcttggaa aaatctgaac
2401 aggacagttc cacgtttcta tagcaaccac atttgactaa tttccgttag ttgaataaga
2461 ggtattatga tcatggaggg gacatttatg gtgctttgga ttgtgtggaa actatgcatt
2521 ttctgttcaa atgctatttt aatttattac atttagaaaa aaagttgatt tcaataattc
2581 atcctgcttc aagattcaaa ttcagaaata tactatcatc ttgaatttta gctgaagaat
2641 cctatgagca tgtatgtttc tgctgtaaaa acgtagttac tgtatggcac tcaaaaacta
2701 tgttaaatga tccactaact ttttttttct tggcccatga ttaatggaat gtatgtaact
2761 aggtagggtt cctttcttag atctagagga agtacagcca cccactgaca tctgaattta
2821 tatacctgtt gagttttgag tgcacccaaa cactcgataa accaggtgaa gaaatttagc
2881 ttccatgttc tacttcagct aaaacagcta catacaacct agtacacttg aagtcagaca
2941 gacatttcag ttgcttacct ccagtactga gccttgcttt gggaaactaa aagatttaga
3001 ccaagtcact gccagttttt gcctttgttg c
//