LOCUS       BC136327                2236 bp    mRNA    linear   HUM 12-MAY-2008
DEFINITION  Homo sapiens collagen, type IX, alpha 2, mRNA (cDNA clone
            MGC:167937 IMAGE:9020314), complete cds.
ACCESSION   BC136327
VERSION     BC136327.1
KEYWORDS    MGC.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 2236)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 2236)
  CONSRTM   NIH MGC Project
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAR-2007) National Institutes of Health, Mammalian
            Gene Collection (MGC), Bethesda, MD 20892-2590, USA
  REMARK    NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT     Contact: MGC help desk
            Email: cgapbs-r@mail.nih.gov
            Tissue Procurement: Mike Brownstein, NIMH
            cDNA Library Preparation: British Columbia Cancer Research Center
            cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
            DNA Sequencing by: Genome Sequence Centre,
            BC Cancer Agency, Vancouver, BC, Canada
            info@bcgsc.bc.ca
            Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
            Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
            Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
            Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
            Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
            Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
            Kim MacDonald,  Mike R. Mayo, Josh Moran, Diana Palmquist, JR
            Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
            Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
            
            Clone distribution: MGC clone distribution information can be found
            through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
            Series: LLDM Plate: 670 Row: d Column: 8.
FEATURES             Location/Qualifiers
     source          1..2236
                     /db_xref="H-InvDB:HIT000500354"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /clone="MGC:167937 IMAGE:9020314"
                     /tissue_type="Brain, cerebellum, PCR rescued clones"
                     /clone_lib="NIH_MGC_311"
                     /note="Vector: pCR4-TOPO with reversed insert; Clone
                     identification sequence tag: GTCCTTTC"
     gene            1..2236
                     /gene="COL9A2"
                     /gene_synonym="DJ39G22.4"
                     /gene_synonym="MED"
                     /db_xref="GeneID:1298"
                     /db_xref="HGNC:HGNC:2218"
                     /db_xref="MIM:120260"
     CDS             64..2133
                     /gene="COL9A2"
                     /gene_synonym="DJ39G22.4"
                     /gene_synonym="MED"
                     /codon_start=1
                     /product="collagen, type IX, alpha 2"
                     /protein_id="AAI36328.1"
                     /db_xref="GeneID:1298"
                     /db_xref="HGNC:HGNC:2218"
                     /db_xref="MIM:120260"
                     /translation="MAAATASPRSLLVLLQVVVLALAQIRGPPGERGPPGPPGPPGVP
                     GSDGIDGDNGPPGKAGPPGPKGEPGKAGPDGPDGKPGIDGLTGAKGEPGPMGIPGVKG
                     QPGLPGPPGLPGPGFAGPPGPPGPVGLPGEIGIRGPKGDPGPDGPSGPPGPPGKPGRP
                     GTIQGLEGSADFLCPTNCPPGMKGPPGLQGVKGHAGKRGILGDPGHQGKPGPKGDVGA
                     SGEQGIPGPPGPQGIRGYPGMAGPKGETGPHGYKGMVGAIGATGPPGEEGPRGPPGRA
                     GEKGDEGSPGIRGPQGITGPKGATGPPGINGKDGTPGTPGMKGSAGQAGQPGSPGHQG
                     LAGVPGQPGTKGGPGDQGEPGPQGLPGFSGPPGKEGEPGPRGEIGPQGIMGQKGDQGE
                     RGPVGQPGPQGRQGPKGEQGPPGIPGPQGLPGVKGDKGSPGKTGPRGKVGDPGVAGLP
                     GEKGEKGESGEPGPKGQQGVRGEPGYPGPSGDAGAPGVQGYPGPPGPRGLAGNRGVPG
                     QPGRQGVEGRDATDQHIVDVALKMLQEQLAEVAVSAKREALGAVGMMGPPGPPGPPGY
                     PGKQGPHGHPGPRGVPGIVGAVGQIGNTGPKGKRGEKGDPGEVGRGHPGMPGPPGIPG
                     LPGRPGQAINGKDGDRGSPGAPGEAGRPGLPGPVGLPGFCEPAACLGASAYASARLTE
                     PGSIKGP"
BASE COUNT          421 a          699 c          828 g          288 t
ORIGIN      
        1 ggagactctg ccgtcggtgc gtgcgcggac acgcacccgt cccccttggt ctcgccgcca
       61 gccatggccg ccgctacggc ctccccccgc agcctccttg ttctcctcca ggtggtagtg
      121 ctcgctctgg cgcagattag aggtccaccg ggagagcggg gccccccggg tcccccggga
      181 ccgccgggag tgcctggatc cgacggcatc gacggtgaca atgggccccc tggaaaagct
      241 ggccctccgg gacccaaggg cgagcctggc aaagctgggc cagatgggcc agacgggaag
      301 cccgggattg atggtttaac tggagccaag ggggagcctg gccccatggg gatccctgga
      361 gtcaagggcc agcccgggct tcctggtcct cctggccttc cgggccctgg ttttgctgga
      421 cctcctgggc ctcctggacc tgttggcctc cctggtgaga ttggaatccg aggccccaag
      481 ggggaccctg gaccagatgg accatcgggg cccccaggac cccctgggaa acctggtcgc
      541 ccgggaacca tccagggtct ggaaggcagt gcggatttcc tgtgtccaac caactgtcca
      601 cccggaatga aaggtccccc agggctgcag ggagtgaagg ggcatgcggg caaacgcggg
      661 attctgggtg atcctggcca ccaggggaag ccgggtccca agggagatgt gggtgcctct
      721 ggagagcaag gcatccctgg accaccgggt ccccagggca tcaggggcta cccaggcatg
      781 gcagggccca agggagagac gggccctcat ggatataaag gcatggtggg cgctatcggt
      841 gccactgggc caccgggtga ggaaggtcct aggggaccgc caggccgagc tggggagaag
      901 ggtgacgagg gcagcccagg tattcgtgga ccccagggga tcacaggccc gaaaggagca
      961 acgggccccc caggcatcaa cggcaaggat gggaccccag gcacgcctgg catgaagggc
     1021 agtgcaggac aggcgggaca gcccggaagt ccaggccacc agggcctagc gggtgtgcca
     1081 ggccagcctg ggacaaaagg aggccctgga gaccagggtg agccgggccc gcagggcctt
     1141 cctggattct ctggtccccc tgggaaagag ggagagccag ggcctcgagg agaaattggt
     1201 ccccagggca tcatgggaca gaagggtgac caaggcgaga ggggtccagt ggggcaacca
     1261 ggccctcagg gaaggcaggg ccctaagggg gagcagggcc cccccggaat tccagggccc
     1321 caaggcttgc caggcgtcaa aggagacaag ggctccccag ggaagaccgg gccccgcggc
     1381 aaagtgggtg acccaggggt ggccggcctc cccggagaga aaggcgagaa gggcgagtcc
     1441 ggcgagccgg ggcccaaggg acagcaagga gtacgtggag aacccggcta ccctggcccc
     1501 agcggggatg cgggcgcccc aggggttcag ggctaccctg gtccccccgg ccctcgagga
     1561 ctggccggga accgaggcgt gccaggacag cccgggagac agggcgtgga gggccgggat
     1621 gccactgacc agcacatcgt ggatgtggcg ctgaagatgc tgcaagagca actggcagag
     1681 gtcgccgtga gtgccaagcg ggaagccctg ggtgcggtgg gcatgatggg tcctccagga
     1741 cctcctgggc cccctgggta cccaggcaag cagggccccc atgggcaccc tggccctcgg
     1801 ggcgttcctg gcatcgtggg agccgtgggt cagatcggca acacggggcc caagggaaaa
     1861 cgtggagaga agggtgatcc aggagaagtg ggacgggggc accccgggat gcctgggccc
     1921 ccagggatcc caggactccc tggccggcct ggccaggcaa tcaacggcaa ggatggagat
     1981 cgagggtccc caggggctcc aggagaggca ggtcgacctg gcctgccagg ccccgtgggg
     2041 ctgccgggct tctgtgaacc tgccgcctgc cttggagctt cggcctatgc ctctgcccgc
     2101 cttacagagc ctggatccat caaggggcct tgagcatcag gcccagacag agcctggcag
     2161 gcatcctggc gggaaggacc aggtcccctc tgggtggaca tgcacccatc cccagtccag
     2221 gaaaccatct ccccca
//