LOCUS BC136327 2236 bp mRNA linear HUM 12-MAY-2008 DEFINITION Homo sapiens collagen, type IX, alpha 2, mRNA (cDNA clone MGC:167937 IMAGE:9020314), complete cds. ACCESSION BC136327 VERSION BC136327.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2236) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2236) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2007) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Mike Brownstein, NIMH cDNA Library Preparation: British Columbia Cancer Research Center cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: LLDM Plate: 670 Row: d Column: 8. FEATURES Location/Qualifiers source 1..2236 /db_xref="H-InvDB:HIT000500354" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:167937 IMAGE:9020314" /tissue_type="Brain, cerebellum, PCR rescued clones" /clone_lib="NIH_MGC_311" /note="Vector: pCR4-TOPO with reversed insert; Clone identification sequence tag: GTCCTTTC" gene 1..2236 /gene="COL9A2" /gene_synonym="DJ39G22.4" /gene_synonym="MED" /db_xref="GeneID:1298" /db_xref="HGNC:HGNC:2218" /db_xref="MIM:120260" CDS 64..2133 /gene="COL9A2" /gene_synonym="DJ39G22.4" /gene_synonym="MED" /codon_start=1 /product="collagen, type IX, alpha 2" /protein_id="AAI36328.1" /db_xref="GeneID:1298" /db_xref="HGNC:HGNC:2218" /db_xref="MIM:120260" /translation="MAAATASPRSLLVLLQVVVLALAQIRGPPGERGPPGPPGPPGVP GSDGIDGDNGPPGKAGPPGPKGEPGKAGPDGPDGKPGIDGLTGAKGEPGPMGIPGVKG QPGLPGPPGLPGPGFAGPPGPPGPVGLPGEIGIRGPKGDPGPDGPSGPPGPPGKPGRP GTIQGLEGSADFLCPTNCPPGMKGPPGLQGVKGHAGKRGILGDPGHQGKPGPKGDVGA SGEQGIPGPPGPQGIRGYPGMAGPKGETGPHGYKGMVGAIGATGPPGEEGPRGPPGRA GEKGDEGSPGIRGPQGITGPKGATGPPGINGKDGTPGTPGMKGSAGQAGQPGSPGHQG LAGVPGQPGTKGGPGDQGEPGPQGLPGFSGPPGKEGEPGPRGEIGPQGIMGQKGDQGE RGPVGQPGPQGRQGPKGEQGPPGIPGPQGLPGVKGDKGSPGKTGPRGKVGDPGVAGLP GEKGEKGESGEPGPKGQQGVRGEPGYPGPSGDAGAPGVQGYPGPPGPRGLAGNRGVPG QPGRQGVEGRDATDQHIVDVALKMLQEQLAEVAVSAKREALGAVGMMGPPGPPGPPGY PGKQGPHGHPGPRGVPGIVGAVGQIGNTGPKGKRGEKGDPGEVGRGHPGMPGPPGIPG LPGRPGQAINGKDGDRGSPGAPGEAGRPGLPGPVGLPGFCEPAACLGASAYASARLTE PGSIKGP" BASE COUNT 421 a 699 c 828 g 288 t ORIGIN 1 ggagactctg ccgtcggtgc gtgcgcggac acgcacccgt cccccttggt ctcgccgcca 61 gccatggccg ccgctacggc ctccccccgc agcctccttg ttctcctcca ggtggtagtg 121 ctcgctctgg cgcagattag aggtccaccg ggagagcggg gccccccggg tcccccggga 181 ccgccgggag tgcctggatc cgacggcatc gacggtgaca atgggccccc tggaaaagct 241 ggccctccgg gacccaaggg cgagcctggc aaagctgggc cagatgggcc agacgggaag 301 cccgggattg atggtttaac tggagccaag ggggagcctg gccccatggg gatccctgga 361 gtcaagggcc agcccgggct tcctggtcct cctggccttc cgggccctgg ttttgctgga 421 cctcctgggc ctcctggacc tgttggcctc cctggtgaga ttggaatccg aggccccaag 481 ggggaccctg gaccagatgg accatcgggg cccccaggac cccctgggaa acctggtcgc 541 ccgggaacca tccagggtct ggaaggcagt gcggatttcc tgtgtccaac caactgtcca 601 cccggaatga aaggtccccc agggctgcag ggagtgaagg ggcatgcggg caaacgcggg 661 attctgggtg atcctggcca ccaggggaag ccgggtccca agggagatgt gggtgcctct 721 ggagagcaag gcatccctgg accaccgggt ccccagggca tcaggggcta cccaggcatg 781 gcagggccca agggagagac gggccctcat ggatataaag gcatggtggg cgctatcggt 841 gccactgggc caccgggtga ggaaggtcct aggggaccgc caggccgagc tggggagaag 901 ggtgacgagg gcagcccagg tattcgtgga ccccagggga tcacaggccc gaaaggagca 961 acgggccccc caggcatcaa cggcaaggat gggaccccag gcacgcctgg catgaagggc 1021 agtgcaggac aggcgggaca gcccggaagt ccaggccacc agggcctagc gggtgtgcca 1081 ggccagcctg ggacaaaagg aggccctgga gaccagggtg agccgggccc gcagggcctt 1141 cctggattct ctggtccccc tgggaaagag ggagagccag ggcctcgagg agaaattggt 1201 ccccagggca tcatgggaca gaagggtgac caaggcgaga ggggtccagt ggggcaacca 1261 ggccctcagg gaaggcaggg ccctaagggg gagcagggcc cccccggaat tccagggccc 1321 caaggcttgc caggcgtcaa aggagacaag ggctccccag ggaagaccgg gccccgcggc 1381 aaagtgggtg acccaggggt ggccggcctc cccggagaga aaggcgagaa gggcgagtcc 1441 ggcgagccgg ggcccaaggg acagcaagga gtacgtggag aacccggcta ccctggcccc 1501 agcggggatg cgggcgcccc aggggttcag ggctaccctg gtccccccgg ccctcgagga 1561 ctggccggga accgaggcgt gccaggacag cccgggagac agggcgtgga gggccgggat 1621 gccactgacc agcacatcgt ggatgtggcg ctgaagatgc tgcaagagca actggcagag 1681 gtcgccgtga gtgccaagcg ggaagccctg ggtgcggtgg gcatgatggg tcctccagga 1741 cctcctgggc cccctgggta cccaggcaag cagggccccc atgggcaccc tggccctcgg 1801 ggcgttcctg gcatcgtggg agccgtgggt cagatcggca acacggggcc caagggaaaa 1861 cgtggagaga agggtgatcc aggagaagtg ggacgggggc accccgggat gcctgggccc 1921 ccagggatcc caggactccc tggccggcct ggccaggcaa tcaacggcaa ggatggagat 1981 cgagggtccc caggggctcc aggagaggca ggtcgacctg gcctgccagg ccccgtgggg 2041 ctgccgggct tctgtgaacc tgccgcctgc cttggagctt cggcctatgc ctctgcccgc 2101 cttacagagc ctggatccat caaggggcct tgagcatcag gcccagacag agcctggcag 2161 gcatcctggc gggaaggacc aggtcccctc tgggtggaca tgcacccatc cccagtccag 2221 gaaaccatct ccccca //