LOCUS BC136270 5112 bp mRNA linear HUM 11-FEB-2009
DEFINITION Homo sapiens nuclear protein, ataxia-telangiectasia locus, mRNA
(cDNA clone MGC:167880 IMAGE:9020257), complete cds.
ACCESSION BC136270
VERSION BC136270.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5112)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 5112)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-MAR-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Ambion
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: LLDM Plate: 670 Row: a Column: 23
single stranded.
FEATURES Location/Qualifiers
source 1..5112
/db_xref="H-InvDB:HIT000500302"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:167880 IMAGE:9020257"
/tissue_type="Testicle, PCR rescued clones"
/clone_lib="NIH_MGC_382"
/lab_host="DH10B"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: CCCATTCC"
gene 1..5112
/gene="NPAT"
/gene_synonym="E14"
/db_xref="GeneID:4863"
/db_xref="HGNC:HGNC:7896"
/db_xref="MIM:601448"
CDS 24..4307
/gene="NPAT"
/gene_synonym="E14"
/codon_start=1
/product="nuclear protein, ataxia-telangiectasia locus"
/protein_id="AAI36271.1"
/db_xref="GeneID:4863"
/db_xref="HGNC:HGNC:7896"
/db_xref="MIM:601448"
/translation="MLLPSDVARLVLGYLQQENLISTCQTFILESSDLKEYAEHCTDE
GFIPACLLSLFGKNLTTILNEYVAMKTKETSNNVPAIMSSLWKKLDHTLSQIRSMQSS
PRFAGSQRARTRTGIAEIKRQRKLASQTAPASAELLTLPYLSGQFTTPPSTGTQVTRP
SGQISDPSRSYFVVVNHSQSQDTVTTGEALNVIPGAQEKKAHASLMSPGRRKSESQRK
STTLSGPHSTIRNFQDPNAFAVEKQMVIENAREKILSNKSLQEKLAENINKFLTSDNN
IAQVPKQTDNNPTEPETSIDEFLGLPSEIHMSEEAIQDILEQTESDPAFQALFDLFDY
GKTKNNKNISQSISSQPMESNPSIVLADETNLAVKGSFETEESDGQSGQPAFCTSYQN
DDPLNALKNSNNHDVLRQEDQENFSQISTSIQKKAFKTAVPTEQKCDIDITFESVPNL
NDFNQRGNSNAECNPHCAELYTNQMSTETEMAIGIEKNSLSSNVPSESQLQPDQPDIP
ITSFVSLGCEANNENLILSGKSSQLLSQDTSLTGKPSKKSQFCENSNDTVKLKINFHG
SKSSDSSEIHKSKIEINVLEPVMSQLSNCQDNSCLQSEILPVSVESSHLNVSGQVEIH
LGDSLSSTKQPSNDSASVELNHTENEAQASKSENSQEPSSSVKEENTIFLSLGGNANC
EKVALTPPEGTPVENSHSLPPESVCSSVGDSHPESQNTDDKPSSNNSAEIDASNIVSL
KVIISDDPFVSSDTELTSAVSSINGENLPTIILSSPTKSPTKNAELVKCLSSEETVGA
VVYAEVGDSASMEQSLLTFKSEDSAVNNTQNEDGIAFSANVTPCVSKDGGYIQLMPAT
STAFGNSNNILIATCVTDPTALGTSVSQSNVVVLPGNSAPMTAQPLPPQLQTPPRSNS
VFAVNQAVSPNFSQGSAIIIASPVQPVLQGMVGMIPVSVVGQNGNNFSTPPRQVLHMP
LTAPVCNRSIPQFPVPPKSQKAQGLRKKPCIGKQVNNLVDSSGHSVGCHAQKTEVSDK
SIATDLGKKSEETTVPFPEESIVPAAKPCHRRVLCFDSTTAPVANTQGPNHKMVSQNK
ERNAVSFPNLDSPNVSSTLKPPSNNAIKREKEKPPLPKILSKSESAISRHTTIRETQS
EKKVSPTEIVLESFHKATANKENELCSDVERQKNPENSKLSIGQQNGGLRSEKSIASL
QEMTKKQGTSSNNKNVLSVGTAVKDLKQEQTKSASSLITTEMLQDIQRHSSVSRLADS
SDLPVPRTPGSGAGEKHKEEPIDIIKAPSSRRFSEDSSTSKVMVPPVTPDLPACSPAS
ETGSENSVNMAAHTLMILSRAAISRTTSATPLKDNTQQFRASSRSTTKKRKIEELDER
ERNSRPSSKNLTNSSIPMKKKKIKKKKLPSSFPAGMDVDKFLLSLHYDE"
BASE COUNT 1722 a 1040 c 917 g 1433 t
ORIGIN
1 tggttcctgc tgtggttttg atcatgttgt taccctcgga cgtagcccgg cttgtattgg
61 gttacttaca gcaagaaaac ctcatttcta cctgccagac ttttattttg gaaagttcag
121 atttaaaaga atatgcagaa cattgtacag atgaagggtt tattccagcc tgcttactgt
181 ccttatttgg aaaaaacttg acaacaattt taaatgagta tgtagctatg aaaacaaaag
241 aaacatcaaa taatgtccca gcaataatgt catctctatg gaagaaattg gaccatacac
301 tttctcagat caggagcatg caaagttccc caaggtttgc tggcagtcag agagcccgaa
361 cgagaactgg aattgcagaa atcaaacggc agagaaagct tgcatctcaa acagctccag
421 ccagtgcaga gttgctcact ttaccttacc tttcaggaca gtttaccact cctccttcca
481 caggtacaca ggttactcga ccaagtggcc aaatttcaga tccatcgagg tcatattttg
541 tagtggtcaa ccactcacag tcacaagata ctgtaaccac tggagaagct ttaaatgtca
601 ttcctggtgc tcaggaaaag aaagcacatg ccagtttaat gtctcccggt agacgcaaaa
661 gtgaatctca gagaaaaagt accactttgt ctggccctca ttcaacaata cggaatttcc
721 aagatccaaa cgcttttgca gtagaaaaac aaatggttat tgaaaatgca cgagaaaaaa
781 tactaagcaa caaatctctt caagaaaagc tagcagaaaa cataaataaa tttttaacta
841 gtgataacaa tattgcccaa gtacctaagc aaacagataa caaccctacg gagccagaga
901 cttcaattga tgaattccta ggacttccga gtgaaattca catgtctgaa gaagctatac
961 aggacatatt ggaacagaca gaatcagacc cagcatttca ggcactcttt gatctctttg
1021 actatggcaa aacaaagaat aataaaaata tatcacaaag tatttccagt caacctatgg
1081 aatccaatcc cagtatagtc ttagcagatg aaactaatct agcagttaaa ggttcttttg
1141 aaacagaaga atctgatggt cagtctggtc agcccgcttt ttgtacatcc tatcagaatg
1201 atgacccatt aaatgctttg aagaatagca acaaccatga tgtgcttaga caagaagacc
1261 aggaaaattt ttcccaaata agtaccagca tacagaaaaa ggcctttaaa acagctgtac
1321 ccactgaaca gaagtgtgac attgacatta cctttgagtc cgtgcctaat ttgaatgact
1381 ttaaccaaag agggaattct aatgctgaat gtaatccaca ttgtgctgaa ttatacacca
1441 atcagatgtc cactgaaact gaaatggcta tagggattga aaagaactct ttgtcttcaa
1501 atgtaccgag tgaatctcag ttacagcctg atcagcctga tataccaata acttcatttg
1561 tttcacttgg ttgtgaagct aacaatgaaa acttaattct ctctgggaag agttctcaac
1621 ttttatccca agatacttca ttaactggaa agccatctaa aaaaagtcaa ttttgtgaaa
1681 attctaatga tacagtaaaa cttaaaatta attttcatgg ttccaagtca tcagattcta
1741 gtgaaattca caagagtaaa atagaaatta atgtgttaga accagttatg tcacagctat
1801 caaattgcca agataattct tgtcttcaaa gtgaaatact acctgtgtct gttgaaagtt
1861 cacatttaaa tgtatctgga caagtagaaa ttcatcttgg agattcgctg tcttctacta
1921 aacaaccatc taatgattca gcatctgttg agttaaatca tacagaaaat gaagctcagg
1981 catccaagtc tgagaattca caggagcctt catcttctgt aaaagaagag aatactattt
2041 ttctctcttt aggtggaaat gctaactgtg agaaagttgc actgacgcct ccagaaggca
2101 ctcctgtaga aaacagtcac tctcttcctc cagaatctgt gtgttcttca gtgggagatt
2161 ctcaccctga gtcccaaaat actgatgata aaccttctag caacaactca gcagagatag
2221 atgcatcaaa tatcgtctct ctcaaagtta tcattagtga tgatccattt gtttcctcag
2281 atactgaact taccagtgct gtttctagta ttaatggaga aaacctgcca actataatct
2341 tgtcttctcc tactaaatca cctactaaaa atgcagaact agttaaatgc ctatcttcag
2401 aagaaactgt aggtgctgtt gtatatgccg aagtagggga ttcagcctca atggaacaga
2461 gtcttttaac attcaaatct gaagactctg cagtaaacaa tactcagaat gaagatggca
2521 ttgctttttc agctaatgtt acaccatgtg tttccaagga tggaggatat atacagttga
2581 tgccagccac aagcacagct tttggcaatt caaataacat tctgatagct acctgtgtga
2641 ctgatccaac agcgttagga acatctgtaa gtcagtctaa tgtagtggtg ttgcctggaa
2701 attctgcacc tatgactgct caacctctac cacctcagtt acagacacca ccaaggtcaa
2761 acagtgtatt tgctgtcaac caagctgtgt caccaaactt ttcacaagga tctgccataa
2821 taattgcctc tccagtccag cctgtactcc aaggaatggt agggatgatc ccagtatctg
2881 tggttggaca gaatggaaat aacttttcta ctcctcctcg gcaggttctt catatgcctt
2941 tgacagcacc tgtatgcaat agaagtatcc ctcaattccc cgtccctcca aaatctcaga
3001 aggctcaggg actaagaaaa aagccttgta taggaaaaca agtaaataat ttggtggatt
3061 cgtcaggtca ttcagttgga tgtcatgcac aaaaaactga agtttctgac aaaagtattg
3121 ccacagatct tgggaaaaaa tcagaagaaa ccacagttcc cttcccagaa gagagtatag
3181 ttccagctgc taaaccatgc cacagacgtg tactctgttt cgacagcact actgctcctg
3241 tggcaaatac gcaggggcca aaccataaga tggtgtccca aaacaaagaa aggaatgcag
3301 tctcttttcc taatcttgac tcacccaatg tgtcctccac cttaaaaccc ccttctaata
3361 atgctatcaa aagagagaaa gagaagcctc ctctgcctaa gattttatct aaatcggaaa
3421 gtgccattag ccggcatacc accataagag aaactcaatc agaaaagaaa gtttcaccaa
3481 cagaaattgt gcttgaatct ttccataaag caacagctaa taaggagaat gaattatgca
3541 gcgatgtaga aagacagaaa aatccagaaa attcaaaact atctattggg cagcaaaatg
3601 ggggtttgcg aagtgagaaa tctatagctt cactgcaaga aatgaccaaa aaacaaggca
3661 catcttcaaa caataaaaat gtactttcag taggtacagc tgtgaaggat ctaaaacaag
3721 aacaaactaa atccgccagt tctttgatta ccacagaaat gttacaggat atacagaggc
3781 acagctcagt aagtaggctt gctgatagta gtgatttacc tgtgccccgg acacctggct
3841 caggggcagg ggaaaaacat aaagaagaac ctatagatat tatcaaggcc ccctctagta
3901 ggcgtttcag tgaagacagt agtacatcaa aagtaatggt ccctcctgtc accccagact
3961 tgcctgcctg cagccctgcc agtgaaacag gaagtgaaaa cagtgtaaat atggctgccc
4021 acacattaat gattctctcc agggcagcca tttctaggac tacttcagca actcctctga
4081 aagataacac acaacagttt agagcatctt caaggagcac cacaaaaaag cggaaaattg
4141 aggaattaga tgaacgtgag cgaaactctc gtccttctag taaaaatctt acaaattcat
4201 caataccaat gaaaaagaag aaaattaaga aaaagaagct tcccagttca tttccagcag
4261 gaatggatgt agacaaattt ttgttatcat tgcattatga tgagtaaaca ttctggacac
4321 ataagaacag taggtgttaa aaactcatat cccttaaact gagtgtaggg aatgggatat
4381 tgacagaatc tgaaagcatg acctgcactt tcattgtact gaaacttcac tttatatcta
4441 aatcatgctg tttctgaaac agcttcctag tttgtaaata gacttacttg gtatattttt
4501 attttgggaa aaacgtttgc agaaatgtaa gtaaagccaa tctgcaaaac tgtatagctt
4561 tgacaattcc atattgtaaa tactgtgtaa atcttgttga aatagaggtt aaatcaacct
4621 aatgttctta cactgtgttt tttgacttct tatgatccct aattctgaga cttactcatc
4681 tggaatagtt tctcacttgt tttggaggaa aatgatgctt attcttataa attaccttca
4741 gtaactattc aataagacat ttaaatacac aatcactaag tactacaaaa taataaccac
4801 ctcaactgat agcaaaatat ctaattagaa atcaacagtt tgatgagttt ttttcctaga
4861 gtgaattact acccctttct tataattgct gtaagtatta tatttctgga atttcacact
4921 ttacctactc tgatcactct gttctctttg ttttaaagag agaattttgt aaaccattta
4981 ttgaatgttc tgatctttca tttataactt aagatttttt acagaacttt aagtggttag
5041 actattgagc cataaaattt tggtttgtag tagagatttc tcggtatgta cttttcccct
5101 aaatgctggg ga
//