LOCUS BC136252 1643 bp mRNA linear HUM 11-FEB-2009
DEFINITION Homo sapiens early growth response 4, mRNA (cDNA clone MGC:167862
IMAGE:9020239), complete cds.
ACCESSION BC136252
VERSION BC136252.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1643)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1643)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-MAR-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Ambion
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: LLDM Plate: 670 Row: a Column: 5
single stranded.
FEATURES Location/Qualifiers
source 1..1643
/db_xref="H-InvDB:HIT000500284"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:167862 IMAGE:9020239"
/tissue_type="Testicle, PCR rescued clones"
/clone_lib="NIH_MGC_382"
/lab_host="DH10B"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: CCGCTCAG"
gene 1..1643
/gene="EGR4"
/gene_synonym="NGFI-C"
/gene_synonym="NGFIC"
/gene_synonym="PAT133"
/db_xref="GeneID:1961"
/db_xref="HGNC:HGNC:3241"
/db_xref="MIM:128992"
CDS 88..1545
/gene="EGR4"
/gene_synonym="NGFI-C"
/gene_synonym="NGFIC"
/gene_synonym="PAT133"
/codon_start=1
/product="EGR4 protein"
/protein_id="AAI36253.1"
/db_xref="GeneID:1961"
/db_xref="HGNC:HGNC:3241"
/db_xref="MIM:128992"
/translation="MLHLSEFSEPDALLVKSTEGCCAEPSAELPRLPARDAPAATGYP
GGDFLSWALNSCGASGDLADSCFLEGPAPTPPPGLSYSGSFFIQAVPEHPHDPEALFN
LMSGILGLAPFPGPEAAASRSPLDAPFPAGSDALLPGPPDLYSPDLGAAPFPEAFWEA
SPCAGAPSQCLYEPQLSPPDVKPGLRAPPASPALDAVSAFKGPYAPWELLSVGAPGNC
GSQGDYQAAPEARFPVIGTKIEDLLSISCPAELPAVPANRLYPSGAYDAFPLAPGDLG
EGAEGLPGLLTPPSGEGGSSGDGGEFLASTQPQLSPLGLRSAAAADFPKPLVADIPGS
SGVAAPPVPPPPPTPFPQAKARRKGRRGGKCSTRCFCPRPHAKAFACPVESCVRSFAR
SDELNRHLRIHTGHKPFQCRICLRNFSRSDHLTTHVRTHTGEKPFACDVCGRRFARSD
EKKRHSKVHLKQKARAEERLKGLGFYSLGLSFASL"
BASE COUNT 236 a 628 c 495 g 284 t
ORIGIN
1 gaacccctac cgccagcctc cccgccaccc gcgcgccccc aagcccagcg ggcgaggccc
61 cgggcgcccc acagccggcg ccgcgccatg ctccacctta gcgagttttc cgaacccgac
121 gcgctcctcg tcaagtccac tgaaggctgt tgcgccgaac ccagcgctga attgccccgg
181 ctgcctgcca gggacgctcc cgcggccacc ggctaccctg gaggcgactt cttgagctgg
241 gctttgaaca gctgcggcgc aagtggggac ttagccgact cctgcttcct ggaggggcct
301 gcgcccacac cccctcccgg cctcagctac agcggtagct tcttcattca ggcagtgccc
361 gaacacccgc acgacccgga ggcactcttc aacctcatgt cgggcatctt aggcctggca
421 cccttccccg gtccagaggc agcagcgtcc agatccccgc tggatgcccc ttttcctgcg
481 gggtccgatg ccttgctgcc gggtccgccg gacctttact ccccggatct gggcgctgcc
541 cctttcccag aggcgttctg ggaggcctcg ccttgcgcgg gtgccccctc gcagtgcctg
601 tatgagcctc agctctcccc gcccgacgtc aagcccggcc tccgggcgcc tcccgcctcg
661 ccagcgctgg acgctgtctc tgccttcaag ggtccctacg cgccctggga gctgctttct
721 gtgggggccc cagggaactg tgggtcacag ggagactacc aggccgcccc ggaggctcgt
781 tttcccgtaa tagggaccaa gattgaggac ttgctgtcca tcagctgccc tgcggaactg
841 ccggccgtcc cagccaacag actctatccc agcggggcct atgacgcttt cccgctggcc
901 ccgggtgact taggggaggg ggctgagggc ctccctgggc tcctgacccc tcctagtggg
961 gagggaggga gtagcggcga cggcggagag tttctggcca gtacgcagcc tcagctttcc
1021 ccgctgggcc ttcgcagcgc cgccgcggcg gacttcccta aacctctggt ggcggacatc
1081 cctggaagca gtggcgtggc tgcaccaccc gtgccgccgc cgccgcccac ccctttcccc
1141 caggccaagg cgcgacgcaa ggggcgccgc ggcggcaaat gcagcacgcg ctgcttctgc
1201 ccgcggccgc acgccaaggc cttcgcttgc ccggtggaga gttgtgtgcg gagctttgcg
1261 cgttccgacg agctcaatcg ccacctgcgc atccacacgg gccacaaacc cttccagtgc
1321 cgcatctgcc tccgcaactt cagccgcagc gaccacctca ccacgcacgt gcgcacccac
1381 accggcgaga agccttttgc ttgcgacgtg tgcggccgcc gcttcgcgcg cagcgatgag
1441 aagaaacggc acagcaaggt gcacctcaag cagaaggcgc gcgccgagga gcggctcaag
1501 ggcctcggct tttactcgct gggcctctcc ttcgcttctc tctgagcaag agatgggttt
1561 atgggttggg gcgccgccgt tcggcgcgca cgagtttcgg gccgttcccc tccccgctct
1621 tcttccaact cctcctcgca cgc
//