LOCUS BC134170 1584 bp mRNA linear VRT 09-JUN-2008
DEFINITION Danio rerio zgc:162964, mRNA (cDNA clone MGC:162964 IMAGE:8103536),
complete cds.
ACCESSION BC134170
VERSION BC134170.1
KEYWORDS MGC.
SOURCE Danio rerio (zebrafish)
ORGANISM Danio rerio
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE 1 (bases 1 to 1584)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1584)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-MAR-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: John Postlethwait, University of Oregon
cDNA Library Preparation: Dr. Sumio Sugano
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 303 Row: n Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi:
126631656.
FEATURES Location/Qualifiers
source 1..1584
/organism="Danio rerio"
/mol_type="mRNA"
/db_xref="taxon:7955"
/clone="MGC:162964 IMAGE:8103536"
/tissue_type="Ovary"
/clone_lib="NIH_ZGC_5"
/lab_host="DH10B"
/note="Vector: pME18S-FL3"
gene 1..1584
/gene="zgc:162964"
/gene_synonym="cb366"
/gene_synonym="GOLPH1"
/gene_synonym="sb:cb366"
/gene_synonym="wu:fa04b12"
/gene_synonym="wu:fd14b03"
/gene_synonym="wu:fi29h06"
/db_xref="GeneID:560569"
/db_xref="ZFIN:ZDB-GENE-030131-9798"
CDS 51..1535
/gene="zgc:162964"
/gene_synonym="cb366"
/gene_synonym="GOLPH1"
/gene_synonym="sb:cb366"
/gene_synonym="wu:fa04b12"
/gene_synonym="wu:fd14b03"
/gene_synonym="wu:fi29h06"
/codon_start=1
/product="zgc:162964 protein"
/protein_id="AAI34171.1"
/db_xref="GeneID:560569"
/db_xref="ZFIN:ZDB-GENE-030131-9798"
/translation="MEFDGEDQGSDRLEKTSSENGINTETHALDTQEDHKTCQDNETP
QKSWSLDRNWGFTLEELFRLALKFFKEMNGKAFNPTYEENLRLVALHKQITLGPYNPN
SCPDIGFFDVLGNDRRKEWLSLGSMAKEDAMEDFVKLLNSCCSLFAPYVTSHKIEKED
QERRQKEEEERLRLEREEQERRRLEEEERRREEEERRAIEEEQRRKEEAQRLQIERQK
QQIMAVLNAQTAVQFQQYAKQQYPDNPEQQQLLIRQLQEQHFQQYVQQALRLQQMASQ
KQQEESTVIQTSEALPAPISNEAVSICNPNSQSNSLDNHKQQKDQKNSHLVVEGETGV
VPIVAPSMWTRPQIKEFKEKVLHDEDSVITVGRGEVLTIRVPTHPDGSYLFWEFATDH
YDIGFGLHFEWKDLTAPTSSNNGGESTTETKEGTAQAEEEKTEQGRIPLVNEVAPVSR
RDSHEEVYAGSHQYPGEGVHLLKFDNSYSLWRPKVVYYRVYYTR"
BASE COUNT 535 a 343 c 396 g 310 t
ORIGIN
1 gactgcagca gcacggtagg agcgtaagcg cggactgaca gtttgacatg atggagtttg
61 acggagaaga tcaaggcagc gaccggctcg agaaaacctc ctccgagaac ggcattaaca
121 ccgaaacaca cgcgctggac acccaagaag accataaaac atgtcaggat aacgaaacac
181 cgcagaagtc atggagtttg gacagaaact gggggtttac tttagaggag ctcttcagac
241 ttgcgctgaa attctttaaa gagatgaatg gaaaggcttt caacccaaca tatgaagaaa
301 accttcgttt ggttgcacta cataagcaaa tcactctcgg cccttataat ccaaacagct
361 gtccagacat tggcttcttt gacgtactgg gaaatgacag aaggaaagaa tggctttccc
421 tgggcagcat ggccaaagaa gacgccatgg aggactttgt gaagcttctg aactcttgtt
481 gtagtttgtt tgcaccatat gtgacgtcac ataaaattga gaaggaggac caagagagga
541 gacaaaaaga agaggaagaa cgtctcaggc tggagagaga agagcaggag agacgacggc
601 tggaagaaga agaacggcgc agagaagaag aggagagaag ggcaatagag gaggaacaga
661 gaaggaaaga agaggcacag aggttacaga tagaacggca aaaacagcag atcatggctg
721 ttctgaatgc acaaacggca gtgcagtttc aacagtatgc caaacaacag tatccagaca
781 atccagagca gcagcagtta ctgatcagac aactgcagga acaacacttc caacagtacg
841 tccagcaggc tctccgctta cagcagatgg cctcgcagaa acagcaggaa gaatcaactg
901 tgattcagac atcagaagct cttcctgctc ctatttctaa cgaagcagtg tccatctgca
961 accccaacag ccaatcaaat tcattagaca atcacaaaca acagaaagac caaaaaaact
1021 cccatttggt tgtagaaggg gaaacaggag tggtacctat cgtggctccc tcaatgtgga
1081 ctcggcctca aataaaggag tttaaggaaa aggttctgca cgatgaggac tctgtcatca
1141 cagtgggccg aggggaagtg ctgaccatcc gagttcccac tcatcctgat ggctcatacc
1201 tgttttggga atttgccacc gatcactatg atatcggttt tgggctgcac ttcgagtgga
1261 aggacttgac cgcaccgaca agcagcaata atggaggaga atctactact gaaaccaaag
1321 aaggcacagc acaagccgaa gaagagaaaa ctgaacaagg cagaattcct ctggttaatg
1381 aagtggctcc tgtttctcgt cgggacagcc atgaggaagt ttacgcaggc agtcatcagt
1441 atcccggtga aggagttcat cttctcaaat ttgacaattc ctactccctc tggaggccaa
1501 aggttgtgta ttatagagtt tattacacca gataaacatc agctggtcat gtgcctcata
1561 aaaaaaaaaa aaaaaaaaaa aaaa
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