LOCUS BC133708 2080 bp mRNA linear HUM 27-MAR-2007 DEFINITION Homo sapiens protocadherin gamma subfamily A, 3, mRNA (cDNA clone IMAGE:40078126), partial cds. ACCESSION BC133708 VERSION BC133708.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2080) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2080) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (02-MAR-2007) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Baylor Human Genome Sequencing Center cDNA Library Preparation: Baylor Human Genome Sequencing Center cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRCG Plate: 14 Row: e Column: 2. FEATURES Location/Qualifiers source 1..2080 /db_xref="H-InvDB:HIT000391132" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:40078126" /tissue_type="PCR rescued clones" /clone_lib="NIH_MGC_283" /note="Vector: pCR-Blunt II-TOPO with reversed insert; Clone identification sequence tag: NA" gene <1..>2080 /gene="PCDHGA3" /gene_synonym="PCDH-GAMMA-A3" /db_xref="GeneID:56112" /db_xref="HGNC:HGNC:8701" /db_xref="MIM:606290" CDS <1..>2080 /gene="PCDHGA3" /gene_synonym="PCDH-GAMMA-A3" /codon_start=2 /product="PCDHGA3 protein" /protein_id="AAI33709.1" /db_xref="GeneID:56112" /db_xref="HGNC:HGNC:8701" /db_xref="MIM:606290" /translation="TNCLSFRNGRGLALLCALLGTLCETGSGQIRYSVSEELDKGSFV GNIANDLGLEPRELAERGVRIVSRGRTQLFSLNSQSGSLVTAERIDREELCAQIPLCL VKINILVEDKLKIFEVEIEIKDINDNAPNFPTEELEIKIGELTVPGTRFPIKTAFDPD VGINSLQNYKLSPNDYFSLAVNSVSEGAKYPELVLERALDREKKEIHQLVLVASDGGD PVHSGNLHIQVIVLDANDNPPMFTQPEYRVSVWENVPVGTRLLTVNATDPDEGFNAQV SYILDKMPGKIAEIFHLNSVSGEVSILKSLDYEDAMFYEIKIEAQDGPGLLSRAKILV TVLDVNDNAPEITITSLTSSVPEEGTVGREIALIDVHDRDSGQNGQVEVFVLGNLPFK LEKSIDQYYRLVTATSLDREQISEYNISLRASDGGSPPLSTETHITLHVIDINDNPPT FPHLSYSAYIPENNPRGASIFSVTAQDPDSNNNARITYALTEDTLQGAPLSSFVSINS NTGVLYALRSFDYEQFRDLKLLVTASDSGNPPLSSNVSLNLFVLDQNDNAPEILYPAL PTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFSVGLHTGE VRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRIPDILADLGSLEPSAK PNDSETQAIGH" BASE COUNT 524 a 576 c 531 g 449 t ORIGIN 1 gaccaattgc ctgagtttcc gaaatggcag aggactggcc ctgctgtgcg cgctcctggg 61 gacgctgtgc gaaacaggat ccggtcagat ccgctactcg gtgtctgagg agctagataa 121 aggttccttc gtgggcaaca tcgctaacga cctggggcta gagccccggg agctggcgga 181 gcgcggagtc cgcatcgtct ccagaggtag gacgcagctt ttctctctga attcgcaaag 241 cggcagcttg gtcaccgcgg agaggataga ccgggaggag ctctgcgctc agatcccgct 301 gtgtctggta aaaattaaca ttctggttga ggataaattg aaaatttttg aagtagaaat 361 agaaattaaa gatattaatg ataatgctcc taatttccca acagaggaat tggaaataaa 421 aattggtgaa ctaacggttc ctggaacccg atttccaatt aaaactgctt ttgacccaga 481 tgtaggcatt aactccctgc agaactacaa gcttagcccc aatgactact tctctctggc 541 tgtgaatagc gtctctgagg gggccaagta tccagagctg gtgctggagc gggccctgga 601 ccgtgagaaa aaagaaattc accagcttgt cctggttgcc tctgatggtg gcgaccctgt 661 ccactctggc aacttgcaca tccaagtgat agtcctggat gcaaatgaca acccaccaat 721 gtttactcag cctgagtacc gtgtgagtgt ttgggagaac gtgcctgtgg gtacccggct 781 gctcacggtg aatgccactg accctgacga gggattcaat gctcaagtgt cttatattct 841 agataaaatg cctgggaaaa tcgctgagat tttccatctt aactcagtga gtggagaagt 901 atcaatatta aaaagtctag attatgagga tgccatgttc tatgaaatta aaattgaagc 961 acaggatgga ccaggtcttc tttcaagagc caagattcta gtcacggttc tggatgtgaa 1021 tgacaatgct ccagaaatta caatcacgtc tctcacaagc tcagtcccag aagagggcac 1081 cgttggaaga gaaattgctc ttatcgacgt gcatgaccga gattctgggc agaatgggca 1141 ggttgaagtt tttgtcctgg gaaatctgcc atttaagtta gaaaaatcaa tagatcaata 1201 ttaccgctta gtgacggcca catccctgga ccgcgaacaa atatcagaat ataacattag 1261 tctgagagcc tcagatgggg gaagcccgcc actgtccaca gaaactcaca tcaccctgca 1321 tgtgattgac atcaatgaca acccacccac cttccctcat ttatcctact ccgcctacat 1381 tccagaaaac aaccccagag gagcctccat cttctcagtg acagcccagg acccagatag 1441 caacaacaac gcccgcatca cttatgcatt gaccgaggac actctccagg gggcgcccct 1501 gtcctccttc gtctctatca actccaacac tggcgtccta tacgcgctga gatccttcga 1561 ctacgagcaa tttagagact taaagctact ggtgacagcc agcgacagcg ggaaccctcc 1621 actcagcagc aacgtgtcgc tgaacctgtt cgtgctggac cagaacgaca acgcgcccga 1681 gatcctgtac cccgccctcc ccacagacgg ttccactggc gtggagctgg cgcctcgctc 1741 cgcagagccc ggctacctgg tgaccaaggt ggtggcggtg gacagagact cgggccagaa 1801 cgcctggctg tcctaccgcc tgctcaaggc cagcgagccg ggactcttct cggtgggtct 1861 gcacacgggc gaggtgcgca cggcgcgagc cctgctggac agagacgcgc tcaagcagag 1921 cctcgtggtg gccgtccagg accacggcca gccccctctc tccgccactg tcacgctcac 1981 cgtggccgtg gccgacagga tccccgacat cctggccgac ctgggcagcc tcgagccctc 2041 cgccaaaccc aacgattcgg aaactcaggc aattggtcat //