LOCUS BC133027 1629 bp mRNA linear HUM 10-JAN-2008 DEFINITION Homo sapiens chromosome 9 open reading frame 117, mRNA (cDNA clone IMAGE:40147049), complete cds. ACCESSION BC133027 VERSION BC133027.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1629) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1629) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (31-JAN-2007) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Mike Brownstein, NIMH cDNA Library Preparation: British Columbia Cancer Research Center cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRCB Plate: 9 Row: P Column: 1 This clone has the following problem: The cds is short compared to the longest cds in the locus. FEATURES Location/Qualifiers source 1..1629 /db_xref="H-InvDB:HIT000391077" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:40147049" /tissue_type="Brain, cerebellum, PCR rescued clones" /clone_lib="NIH_MGC_311" /note="Vector: pCR4-TOPO with reversed insert; Clone identification sequence tag: GTTCAGCG" gene 1..1629 /gene="C9orf117" /gene_synonym="RP11-56D16.5" /db_xref="GeneID:286207" /db_xref="HGNC:HGNC:27843" CDS 736..1116 /gene="C9orf117" /gene_synonym="RP11-56D16.5" /codon_start=1 /product="C9orf117 protein" /protein_id="AAI33028.1" /db_xref="GeneID:286207" /db_xref="HGNC:HGNC:27843" /translation="MGTEVGISWTRVGTGATVGLLPPHPHQQMHRDEEDSDVDVTFQP WHKEMLQQLLVMLSSTVATRPQKAACPHQESQSHGPPKESVPWAPTQRSGNAEQRCSG EGARRRGPETRPLRTPEGWAGRAP" BASE COUNT 339 a 488 c 536 g 266 t ORIGIN 1 tcctgctgag ccagttggag cagagatccc tgcagctgca ggtggataac caggcactga 61 agtgcgtatg gcccacggag gggcgggcgg cgggtgcagg ctggggccaa gctctggccc 121 agctctttcc gatcccacga cccaggccag tgacttcccc tctctagagg agcctgccag 181 acaggctgag gcttggggcg ggatgggggc ccctgtgggc ttggagagaa atggcagggc 241 ccctggcccc aggtggcccc agtcctgggg aagggggaag gctgttgact catcccagtt 301 ggggtccagg agccagagag accagctgag cctgcagctg gagcagcagc aggtggattt 361 gcagcggcta cagcaggaac tggctaatga gcagaaggtt cgggccagcc tggaggcggc 421 tctggtccag gccacctcct tcctacagaa cattctgcag gtgagcagaa gggagagagg 481 gagggcgcaa ggggaggggg agtgagcgca agatggaagc tgcttgcaga gaaggggctg 541 cctcaggatc agaggcccct cttttccctg agagactcct ggaaagtctg tccttcgctg 601 attctggcct tcaaagatcc ctccaaggtc ttaaaggagc tggattcctt ctctgaggct 661 ctgaaaggtc ttgggcctca gtcttcccga ctgaagaatg ggtatcccac cacagacagg 721 gaaaacttcg tggaaatggg cactgaggtt ggaatttcct ggacgagggt gggtactggg 781 gccactgtgg gcctgctgcc accccaccct caccaacaga tgcaccgcga tgaagaggac 841 agtgacgttg acgtgacgtt ccagccatgg cacaaggaga tgctgcagca actgctggtc 901 atgctcagct ccactgtggc cacgagacct cagaaggctg cgtgtcccca ccaggagtca 961 cagtcccatg gcccacccaa ggagagcgtc ccgtgggccc caacgcagag gagcggaaac 1021 gcagagcaac gctgcagtgg ggaaggggcg cgaagaaggg gcccagaaac ccgacccctg 1081 agaactccag aaggctgggc aggcagggcg ccctagtgca ggaacggagc ttcaagaagt 1141 ttggagcccg tcgagcactg aactcaccag ttaagaaaac agagcagcaa tttgggggca 1201 ctcggctccc gggacataat ggccgaactg aagctaggga ccgggagccc ctacgtcgcc 1261 gccccacgcc actcaccatc caccgcttcc ccggggggcg aggctccaaa acacatcggc 1321 tcatggctct actcagccgc tgtccggcgc ccaaaaagcc gcccggcctc atgctgcccc 1381 cattcactcc gacaccgccc cctgacgtca tcaccccgca gcagccaatc gtgttgccaa 1441 ctgtttggcg tccaccgcca acgtccaatc cgggccgggc tacgtggccg ccatgcttct 1501 gaggggcgga agcggcgagg cggtggccga gtccgggaac ccaggcgcct tcagtagcgc 1561 ggcgtcacag tgtcccttcg ggacttgtgt gggacgctcg gagctcttgc ttgaccttcg 1621 gttgggagg //