LOCUS BC132963 3001 bp mRNA linear HUM 06-DEC-2007
DEFINITION Homo sapiens PRP38 pre-mRNA processing factor 38 (yeast) domain
containing B, mRNA (cDNA clone MGC:164594 IMAGE:40146985), complete
cds.
ACCESSION BC132963
VERSION BC132963.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3001)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3001)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 9 Row: M Column: 9.
FEATURES Location/Qualifiers
source 1..3001
/db_xref="H-InvDB:HIT000391014"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:164594 IMAGE:40146985"
/tissue_type="Pooled, cerebellum, kidney, placenta,
testis, lung, colon, liver, heart, thyroid, bladder,
uterus, PCR rescued clones"
/clone_lib="NIH_MGC_362"
/lab_host="DH10B"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: GTTTGACT"
gene 1..3001
/gene="PRPF38B"
/gene_synonym="RP11-293A10.1"
/db_xref="GeneID:55119"
/db_xref="HGNC:HGNC:25512"
CDS 29..1669
/gene="PRPF38B"
/gene_synonym="RP11-293A10.1"
/codon_start=1
/product="PRP38 pre-mRNA processing factor 38 (yeast)
domain containing B"
/protein_id="AAI32964.1"
/db_xref="GeneID:55119"
/db_xref="HGNC:HGNC:25512"
/translation="MANNSPALTGNSQPQHQAAAAAAQQQQQCGGGGATKPAVSGKQG
NVLPLWGNEKTMNLNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKG
SRKTAGQTGMCGGVRGVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRAL
GFMYIRYTQPPTDLWDWFESFLDDEEDLDVKAGGGCVMTIGEMLRSFLTKLEWFSTLF
PRIPVPVQKNIDQQIKTRPRKIKKDGKEGAEEIDRHVERRRSRSPRRSLSPRRSPRRS
RSRSHHREGHGSSSFDRELEREKERQRLEREAKEREKERRRSRSIDRGLERRRSRSRE
RHRSRSRSRDRKGDRRDRDREREKENERGRRRDRDYDKERGNEREKERERSRERSKEQ
RSRGEVEEKKHKEDKDDRRHRDDKRDSKKEKKHSRSRSRERKHRSRSRSRNAGKRSRS
RSKEKSSKHKNESKEKSNKRSRSGSQGRTDSVEKSKKREHSPSKEKSRKRSRSKERSH
KRDHSDSKDQSDKHDRRRSQSIEQESQEKQHKNKDETV"
BASE COUNT 997 a 509 c 716 g 779 t
ORIGIN
1 ttccctccct ccttccttcc gccgcaacat ggctaacaac agccccgcgc tgacaggcaa
61 ctcgcagccg cagcaccagg cggctgcagc tgcggctcag caacagcagc agtgcggcgg
121 cggcggcgct accaagccgg cggtctccgg caagcagggc aatgtgctcc cgctctgggg
181 caacgagaag accatgaacc tcaaccccat gatcctgacc aacatcctgt cgtcgcctta
241 cttcaaagta cagctctacg agctcaagac ctaccacgag gtggtggacg agatctactt
301 taaggtcacg cacgttgaac catgggagaa aggaagcagg aaaacagcgg gccagacagg
361 gatgtgcgga ggggttcgag gtgttggaac aggaggaatt gtttctacag cattttgcct
421 gttatacaaa ttatttaccc tgaagttaac tcgaaagcaa gtgatgggtc ttataacaca
481 cacagactct ccatatatta gagcgcttgg atttatgtat ataagatata cacagccccc
541 tacagatctg tgggactggt ttgaatcctt ccttgatgat gaagaggacc tagatgtgaa
601 ggctggtgga ggctgtgtaa tgaccattgg agaaatgcta cgatcttttc tcacaaaact
661 ggagtggttt tctaccttgt ttccaagaat tccagttcca gttcaaaaga atattgatca
721 acagattaaa acccgaccta gaaaaatcaa gaaagatggg aaggaaggtg ctgaggaaat
781 agacagacat gttgaacgca gacgttcaag gtctccaagg agatctctga gtccacggag
841 gtccccaaga aggtcaagaa gtagaagtca tcatcgggag ggccatgggt cttctagttt
901 tgacagagaa ttagaaagag agaaagaacg ccagcgacta gagcgtgaag ccaaagaaag
961 ggagaaagaa cggcgaagat cccgaagtat tgaccggggg ttagaacgca ggcgcagcag
1021 aagtagggaa aggcatagaa gtcgcagtcg aagtcgtgat aggaaagggg atagaaggga
1081 cagggatcga gaaagagaga aagaaaatga gagaggtaga agacgagatc gtgactatga
1141 taaggaaaga ggaaatgaac gagaaaaaga gagagagcga tcaagagaaa ggtccaagga
1201 acagagaagt aggggagagg tagaagagaa gaaacataaa gaagacaaag atgataggcg
1261 gcacagagat gacaaaagag attccaagaa agagaaaaaa cacagtagaa gcagaagcag
1321 agaaaggaaa cacagaagta ggagtcgaag tagaaatgca gggaaacgaa gtagaagtag
1381 aagcaaagag aaatcaagta aacataaaaa tgaaagtaaa gaaaaatcaa ataaacgaag
1441 tcgaagtggc agtcaaggaa gaactgacag tgttgaaaaa tcaaaaaaac gggaacatag
1501 tcccagcaaa gaaaaatcta gaaagcgtag tagaagcaaa gaacgttccc acaaacgaga
1561 tcacagtgat agtaaggacc agtcagacaa acatgatcgt cgaaggagcc aaagtataga
1621 acaagagagc caagaaaaac agcataaaaa caaagatgag actgtgtgaa aatattttgt
1681 aaaagtggat cacattgaat cctataaatg attaaatctg cttttttccc ccacgttgag
1741 attgtgcagt agttcgcact cctcaagctc tccctgtagg ctgcattttc atttcctctt
1801 tcgtgtaggg aagtgccttt gtaattccat ttattgcatt ggtgttttca cccaattgtt
1861 aagtttgata catgatgcac agattgttct tgcattttta ttgtttgttt ttgaaatgta
1921 cagtctgtac atatgtcctg aaaatgtttt aattcctttg gcatggttgc catgttggtt
1981 aaatttgtat aaggcaataa actgccacta atctattttt gttttgtagg tgtgggatta
2041 tggtttgtgt actgaagtta gcatggctgt gcttttcgta atagaatgct aaagactttg
2101 agaatggatc ttggatgtct attataggag aagtatgtgc tgccaatgta caagaaggca
2161 gcattgtagg attaacattc ttgtctactg tatattatct tggaaggctc ttgttaatat
2221 gttacactta atattctcca cagttacctt tagagagaat ttatgagaag ttagtttctg
2281 atgcagaggt ttttaggctg tgatttcatc aaaagtcctt ttagcattct acctcaaagg
2341 gacacttagt atgcctaaaa tttattcact tagttttcct tttttatttg aaaaaataca
2401 tgacatgtaa tctttttttc ttgaattctt tctcagattt taaagtacta tattaaagaa
2461 aaaaattaat gtctaaagcc tagcattctt gcagaaccct atactaacat gtaatgggga
2521 gagggtgggg cagatgagta gagaaacaga ttcaagcctc aagcttccaa agcattttta
2581 taaatggaaa atccttaaat tatgaaacag cttgatatag tgtccttttt ttaaaattca
2641 gaactttttt tattgataat ggagattgct gtttgagttt ttaaacttaa tctagaacag
2701 aggagtatta aaagtaatgc tgtgctgcat tatttaagac tatcagcaaa ttatttgata
2761 gattgttctt acaacttgta ttctgattac agaaccatca tgagtgtgga ataaatactg
2821 gattaaatcc tttatcctgg gtcttggctt ttcccccatt tgttaaattt ttttagcata
2881 tttatattgt ggaaattgat gaaacgtcag tagagtcaca ctttgtgtac agggatgtct
2941 tagtgcccag atgacaagtg aattttggag aaatgcatag actgggattg ggcatgtggt
3001 a
//