LOCUS BC132933 1139 bp mRNA linear HUM 06-DEC-2007
DEFINITION Homo sapiens C-type lectin domain family 6, member A, mRNA (cDNA
clone MGC:164564 IMAGE:40146955), complete cds.
ACCESSION BC132933
VERSION BC132933.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1139)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1139)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 9 Row: L Column: 3.
FEATURES Location/Qualifiers
source 1..1139
/db_xref="H-InvDB:HIT000390984"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:164564 IMAGE:40146955"
/tissue_type="Pooled, cerebellum, kidney, placenta,
testis, lung, colon, liver, heart, thyroid, bladder,
uterus, PCR rescued clones"
/clone_lib="NIH_MGC_362"
/lab_host="DH10B"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: CAATGCAG"
gene 1..1139
/gene="CLEC6A"
/gene_synonym="dectin-2"
/db_xref="GeneID:93978"
/db_xref="HGNC:HGNC:14556"
CDS 24..653
/gene="CLEC6A"
/gene_synonym="dectin-2"
/codon_start=1
/product="C-type lectin domain family 6, member A"
/protein_id="AAI32934.1"
/db_xref="GeneID:93978"
/db_xref="HGNC:HGNC:14556"
/translation="MMQEQQPQSTEKRGWLSLRLWSVAGISIALLSACFIVSCVVTYH
FTYGETGKRLSELHSYHSSLTCFSEGTKVPAWGCCPASWKSFGSSCYFISSEEKVWSK
SEQNCVEMGAHLVVFNTEAEQNFIVQQLNESFSYFLGLSDPQGNNNWQWIDKTPYEKN
VRFWHLGEPNHSAEQCASIVFWKPTGWGWNDVICETRRNSICEMNKIYL"
BASE COUNT 324 a 212 c 234 g 369 t
ORIGIN
1 tctcaacaca gggagcctgc ataatgatgc aagagcagca acctcaaagt acagagaaaa
61 gaggctggtt gtccctgaga ctctggtctg tggctgggat ttccattgca ctcctcagtg
121 cttgcttcat tgtgagctgt gtagtaactt accattttac atatggtgaa actggcaaaa
181 ggctgtctga actacactca tatcattcaa gtctcacctg cttcagtgaa gggacaaagg
241 tgccagcctg gggatgttgc ccagcttctt ggaagtcatt tggttccagt tgctacttca
301 tttccagtga agagaaggtt tggtctaaga gtgagcagaa ctgtgttgag atgggagcac
361 atttggttgt gttcaacaca gaagcagagc agaatttcat tgtccagcag ctgaatgagt
421 cattttctta ttttctgggg ctttcagacc cacaaggtaa taataattgg caatggattg
481 ataagacacc ttatgagaaa aatgtcagat tttggcacct aggtgagccc aatcattctg
541 cagagcaatg tgcttcaata gtcttctgga aacctacagg atggggctgg aatgatgtta
601 tctgtgaaac tagaaggaat tcaatatgtg agatgaataa gatttaccta tgagtagaag
661 cttaattgga aagaagagaa gaattactga cgtaattttt tccctgacgt ctttaaaatt
721 gaaccctatc atgaaatgat aatttcttcc tgaatttaca cataatcctt atgttataga
781 ggttcacaga aatggaaaga tacctgtttc cctttaatca atcttctcgt ttcctctttt
841 ccattaatga tagaatgcac ccttcctctc tttgttccat tctttcactt gttattcatt
901 tttttctttc ttcacacttc attacacaaa tatttattgt ttcagagact gtactatttt
961 gtttgttaga agatttataa ggcagtatct tttgaaaatt atgactttcc ttcctcaata
1021 taccataaag aaatcttttt ggtcaagatg gtagttggaa ctacaatcat ctgaaggcct
1081 gacaagagtt gaaagacatg ttttctagat ggctcactca catggctggc aacttggtg
//