LOCUS BC132862 4093 bp mRNA linear HUM 06-DEC-2007
DEFINITION Homo sapiens ubiquitin specific peptidase 42, mRNA (cDNA clone
MGC:164493 IMAGE:40146884), complete cds.
ACCESSION BC132862
VERSION BC132862.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4093)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4093)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 9 Row: I Column: 4.
FEATURES Location/Qualifiers
source 1..4093
/db_xref="H-InvDB:HIT000390915"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:164493 IMAGE:40146884"
/tissue_type="Pooled, cerebellum, kidney, placenta,
testis, lung, colon, liver, heart, thyroid, bladder,
uterus, PCR rescued clones"
/clone_lib="NIH_MGC_363"
/lab_host="DH10B"
/note="Vector: pCR-XL-TOPO; Clone identification sequence
tag: GTGCCCTT"
gene 1..4093
/gene="USP42"
/db_xref="GeneID:84132"
/db_xref="HGNC:HGNC:20068"
CDS 21..3971
/gene="USP42"
/codon_start=1
/product="ubiquitin specific peptidase 42"
/protein_id="AAI32863.1"
/db_xref="GeneID:84132"
/db_xref="HGNC:HGNC:20068"
/translation="MTIVDKASESSDPSAYQNQPGSSEAVSPGDMDAGSASWGAVSSL
NDVSNHTLSLGPVPGAVVYSSSSVPDKSKPSPQKDQALGDGIAPPQKVLFPSEKICLK
WQQTHRVGAGLQNLGNTCFANAALQCLTYTPPLANYMLSHEHSKTCHAEGFCMMCTMQ
AHITQALSNPGDVIKPMFVINEMRRIARHFRFGNQEDAHEFLQYTVDAMQKACLNGSN
KLDRHTQATTLVCQIFGGYLRSRVKCLNCKGVSDTFDPYLDITLEIKAAQSVNKALEQ
FVKPEQLDGENSYKCSKCKKMVPASKRFTIHRSSNVLTLSLKRFANFTGGKIAKDVKY
PEYLDIRPYMSQPNGEPIVYVLYAVLVHTGFNCHAGHYFCYIKASNGLWYQMNDSIVS
TSDIRSVLSQQAYVLFYIRSHDVKNGGELTHPTHSPGQSSPRPVISQRVVTNKQAAPG
FIGPQLPSHMIKNPPHLNGTGPLKDTPSSSMSSPNGNSSVNRASPVNASASVQNWSVN
RSSVIPEHPKKQKITISIHNKLPVRQCQSQPNLHSNSLENPTKPVPSSTITNSAVQST
SNASTMSVSSKVTKPIPRSESCSQPVMNGKSKLNSSVLVPYGAESSEDSDEESKGLGK
ENGIGTIVSSHSPGQDAEDEEATPHELQEPMTLNGANSADSDSDPKENGLAPDGASCQ
GQPALHSENPFAKANGLPGKLMPAPLLSLPEDKILETFRLSNKLKGSTDEMSAPGAER
GPPEDRDAEPQPGSPAAESLEEPDAAAGLSSTKKAPPPRDPGTPATKEGAWEAMAVAP
EEPPPSAGEDIVGDTAPPDLCDPGSLTGDASPLSQDAKGMIAEGPRDSALAEAPEGLS
PAPPARSEEPCEQPLLVHPSGDHARDAQDPSQSLGAPEAAERPPAPVLDMAPAGHPEG
DAEPSPGERVEDAAAPKAPGPSPAKEKIGSLRKVDRGHYRSRRERSSSGEPARESRSK
TEGHRHRRRRTCPRERDRQDRHAPEHHPGHGDRLSPGERRSLGRCSHHHSRHRSGVEL
DWVRHHYTEGERGWGREKFYPDRPRWDRCRYYHDRYALYAARDWKPFHGGREHERAGL
HERPHKDHNRGRRGCEPARERERHRPSSPRAGAPHALAPHPDRFSHDRTALVAGDNCN
LSDRFHEHENGKSRKRRHDSVENSDSHVEKKARRSEQKDPLEEPKAKKHKKSKKKKKS
KDKHRDRDSRHQQDSDLSAACSDADLHRHKKKKKKKKRHSRKSEDFVKDSELHLPRVT
SLETVAQFRRAQGGFPLSGGPPLEGVGPFREKTKHLRMESRDDRCRLFEYGQGD"
BASE COUNT 1071 a 1177 c 1061 g 784 t
ORIGIN
1 agccgggtca gagttgaaca atgaccatag ttgacaaagc ttctgaatct tcagacccat
61 cagcctatca gaatcagcct ggcagctccg aggcagtctc acctggagac atggatgcag
121 gttctgccag ctggggtgct gtgtcttcat tgaatgatgt gtcaaatcac acactttctt
181 taggaccagt acctggtgct gtagtttatt cgagttcatc tgtacctgat aaatcaaaac
241 catcaccaca aaaggatcaa gccctaggtg atggcatcgc tcctccacag aaagttcttt
301 tcccatctga gaagatttgt cttaagtggc aacaaactca tagagttgga gctgggctcc
361 agaatttggg caatacctgt tttgccaatg cagcactgca gtgtttaacc tacacaccac
421 ctcttgccaa ttacatgcta tcacatgaac actccaaaac atgtcatgca gaaggctttt
481 gtatgatgtg tacaatgcaa gcacatatta cccaggcact cagtaatcct ggggacgtta
541 ttaaaccaat gtttgtcatc aatgagatgc ggcgtatagc taggcacttc cgttttggaa
601 accaagaaga tgcccatgaa ttccttcaat acactgttga tgctatgcag aaagcatgct
661 tgaatggcag caataaatta gacagacaca cccaggccac cactcttgtt tgtcagatat
721 ttggaggata cctaagatct agagtcaaat gtttaaattg caagggcgtt tcagatactt
781 ttgatccata tcttgatata acattggaga taaaggctgc tcagagtgtc aacaaggcat
841 tggagcagtt tgtgaagccg gaacagcttg atggagaaaa ctcgtacaag tgcagcaagt
901 gtaaaaagat ggttccagct tcaaagaggt tcactatcca tagatcctct aatgttctta
961 cactttctct gaaacgtttt gcaaatttta ccggtggaaa aattgctaag gatgtgaaat
1021 accctgagta tcttgatatt cggccatata tgtctcaacc caacggagag ccaattgtct
1081 acgtcttgta tgcagtgctg gtccacactg gttttaattg ccatgctggc cattacttct
1141 gctacataaa agctagcaat ggcctctggt atcaaatgaa tgactccatt gtatctacca
1201 gtgatattag atcggtactc agccaacaag cctatgtgct cttttatatc aggtcccatg
1261 atgtgaaaaa tggaggtgaa cttactcatc ccacccatag ccccggccag tcctctcccc
1321 gccccgtcat cagtcagcgg gttgtcacca acaaacaggc tgcgccaggc tttatcggac
1381 cacagcttcc ctctcacatg ataaagaatc cacctcactt aaatgggact ggaccattga
1441 aagacacgcc aagcagttcc atgtcgagtc ctaacgggaa ttccagtgtc aacagggcta
1501 gtcctgttaa tgcttcagct tctgtccaaa actggtcagt taataggtcc tcagtgatcc
1561 cagaacatcc taagaaacaa aaaattacaa tcagtattca caacaagttg cctgttcgcc
1621 agtgtcagtc tcaacctaac cttcatagta attctttgga gaaccctacc aagcccgttc
1681 cctcttctac cattaccaat tctgcagtac agtctacctc gaacgcatct acgatgtcag
1741 tttctagtaa agtaacaaaa ccgatccccc gcagtgaatc ctgctcccag cccgtgatga
1801 atggcaaatc caagctgaac tccagcgtgc tggtgcccta tggcgccgag tcctctgagg
1861 actctgacga ggagtcaaag gggctgggca aggagaatgg gattggtacg attgtgagct
1921 cccactctcc cggccaagat gccgaagatg aggaggccac tccgcacgag cttcaagaac
1981 ccatgaccct aaacggtgct aatagtgcag acagcgacag tgacccgaaa gaaaacggcc
2041 tagcgcctga tggtgccagc tgccaaggcc agcctgccct gcactcagaa aatccctttg
2101 ctaaggcaaa cggtcttcct ggaaagttga tgcctgctcc tttgctgtct ctcccagaag
2161 acaaaatctt agagaccttc aggcttagca acaaactgaa aggctcgacg gatgaaatga
2221 gtgcacctgg agcagagagg ggccctcccg aggaccgcga cgccgagcct cagcctggca
2281 gccccgccgc cgaatccctg gaggagccag atgcggccgc cggcctcagc agcaccaaga
2341 aggctccgcc gccccgcgat cccggcaccc ccgctaccaa agaaggcgcc tgggaggcca
2401 tggccgtcgc ccccgaggag cctccgccca gcgccggcga ggacatcgtg ggggacacag
2461 caccccctga cctgtgtgat cccgggagct taacaggcga tgcgagcccg ttgtcccagg
2521 acgcaaaggg gatgatcgcg gagggcccgc gggactcggc gttggcggaa gccccggaag
2581 ggttgagtcc ggctccgcct gcgcggtcgg aggagccctg cgagcagcca ctccttgttc
2641 accccagcgg ggaccacgcc cgggacgctc aggacccatc ccagagcttg ggcgcacccg
2701 aggccgcaga gcggccgcca gctcctgtgc tggacatggc cccggccggt cacccggaag
2761 gggacgctga gcctagcccc ggcgagaggg tcgaggacgc cgcggcgccg aaagccccag
2821 gcccttcccc agcgaaggag aaaatcggca gcctcagaaa ggtggaccga ggccactacc
2881 gcagccggag agagcgctcg tccagcgggg agcccgccag agagagcagg agcaagactg
2941 agggccaccg tcaccggcgg cgccgcacct gcccccggga gcgcgaccgc caggaccgcc
3001 acgccccgga gcaccacccc ggccacggcg acaggctcag ccctggcgag cgccgctctc
3061 tgggcaggtg cagtcaccac cactcccgac accggagcgg ggtggagctg gactgggtca
3121 gacaccacta caccgagggc gagcgtggct ggggccggga gaagttctac cccgacaggc
3181 cgcgctggga caggtgccgg tactaccatg acaggtacgc cctgtacgct gcccgggact
3241 ggaagccctt ccacggcggc cgcgagcacg agcgggccgg gctgcacgag cggccgcaca
3301 aggaccacaa ccggggccgt aggggctgcg agccggcccg ggagagggag cggcaccgcc
3361 ccagcagccc ccgcgcaggc gcgccccacg ccctcgcccc gcaccccgac cgcttctccc
3421 acgacagaac tgcacttgta gccggagaca actgtaacct ctctgatcgg tttcacgaac
3481 acgaaaatgg aaagtcccgg aaacggagac acgacagtgt ggagaacagt gacagtcatg
3541 ttgaaaagaa agcccggagg agcgaacaga aggatcctct agaagagcct aaagcaaaga
3601 agcacaaaaa atcaaagaag aaaaagaaat ccaaagacaa acaccgagac cgcgactcca
3661 ggcatcagca ggactcagac ctctcagcag cgtgctctga cgctgacctc cacagacaca
3721 aaaaaaagaa gaagaaaaag aagagacatt caagaaaatc agaggacttt gttaaagatt
3781 cagaactgca cttacccagg gtcaccagct tggagactgt cgcccagttc cggagagccc
3841 agggtggctt tcctctctct ggtggcccgc ctctggaagg cgtcggacct ttccgtgaga
3901 aaacgaaaca cttacggatg gaaagcaggg atgacaggtg tcgtctcttt gagtatggcc
3961 agggtgattg aaaactcagc ctcaaaacaa aaaattcact agttatgatt caacgcgttc
4021 aacagaagcc atccccagcc cagcttaaat tataaagata gacaataact ctgttccaat
4081 ctgcgtggtg ctt
//