LOCUS BC132814 5235 bp mRNA linear HUM 06-DEC-2007 DEFINITION Homo sapiens FYVE, RhoGEF and PH domain containing 5, mRNA (cDNA clone MGC:164445 IMAGE:40146836), complete cds. ACCESSION BC132814 VERSION BC132814.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 5235) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 5235) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (31-JAN-2007) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Mike Brownstein, NIMH cDNA Library Preparation: British Columbia Cancer Research Center cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRCB Plate: 9 Row: G Column: 4. FEATURES Location/Qualifiers source 1..5235 /db_xref="H-InvDB:HIT000390867" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:164445 IMAGE:40146836" /tissue_type="Pooled, cerebellum, kidney, placenta, testis, lung, colon, liver, heart, thyroid, bladder, uterus, PCR rescued clones" /clone_lib="NIH_MGC_364" /lab_host="DH10B" /note="Vector: pCR-XL-TOPO with reversed insert; Clone identification sequence tag: TTTATATT" gene 1..5235 /gene="FGD5" /gene_synonym="ZFYVE23" /db_xref="GeneID:152273" /db_xref="HGNC:HGNC:19117" CDS 472..4137 /gene="FGD5" /gene_synonym="ZFYVE23" /codon_start=1 /product="FYVE, RhoGEF and PH domain containing 5" /protein_id="AAI32815.1" /db_xref="GeneID:152273" /db_xref="HGNC:HGNC:19117" /translation="MGQDAEDTSEEPPEKEELAGVQEAETATDCPEVLEEGCEEATGV TGGEQVDLSEPPDHEKKTNQEVAAATLEDHAQDESAEESCQIVPFENDCMEDFVTSLT GSPYEFFPTESTSFCSESCSPLSESAKGLESEQAPKLGLRAEENPMVGALCGQCGSLQ GGAAEGPAAPDVVVVLEEEALDDALANPYVMGVGLPGQAAPGEGGQAASDALGGYGSK EELNCEAEGGLVPADRKNTSTRVRPHSGKVAGYVPETVPEETGPEAGSSAPGIGGAAE EVGKTLLSLEGKPLEASRALPAKPRAFTLYPRSFSVEGREIPVSVYQEPEGSGLDDHR IKRKEDNLSLSCVIGSSGSFSQRNHLPSSGTSTPSSMVDIPPPFDLACITKKPITKSS PSLLIESDSPDKYKKKKSSFKRFLALTFKKKTENKLHVDVNVSSSRSSSESSYHGPSR ILEVDRRSLSNSPQLKSRTGKLRASESPSSLIFYRDGKRKGVPFSRTVSRVESFEDRS RPPFLPLPLTKPRSISFPSADTSDYENIPAMNSDYENIQIPPRRPARAGAFTKLFEDQ SRALSTANENDGYVDMSSFNAFESKQQSADQDAESAYTEPYKVCPISSAAPKEDLTSD EEQRSSEEEDSASRDPSVTHKVEGQSRALVIAQELLSSEKAYVEMLQHLNLDFHGAVM RALDDMDHEGRDTLAREELRQGLSELPAIHDLHQGILEELEERLSNWESQQKVADVFL AREQGFDHHATHILQFDRYLGLLSENCLHSPRLAAAVREFEQSVQGGSQTAKHRLLRV VQRLFQYQVLLTDYLNNLCPDSAEYDNTQGALSLISKVTDRANDSMEQGENLQKLVHI EHSVRGQGDLLQPGREFLKEGTLMKVTGKNRRPRHLFLMNDVLLYTYPQKDGKYRLKN TLAVANMKVSRPVMEKVPYALKIETSESCLMLSASSCAERDEWYGCLSRALPEDYKAQ ALAAFHHSVEIRERLGVSLGERPPTLVPVTHVMMCMNCGCDFSLTLRRHHCHACGKIV CRNCSRNKYPLKYLKDRMAKVCDGCFGELKKRGRAVPGLMRERPVSMSFPLSSPRFSG SAFSSVFQSINPSTFKKQKKVPSALTEVAASGEGSAISGYLSRCKRGKRHWKKLWFVI KGKVLYTYMASEDKVALESMPLLGFTIAPEKEEGSSEVGPIFHLYHKKTLFYSFKAED TNSAQRWIEAMEDASVL" BASE COUNT 1277 a 1367 c 1511 g 1080 t ORIGIN 1 gggaacaaag ccctggtgtc tcccgagtcc tctgcggaag aggaagagga gcgtgaagag 61 ggaggcgagg catgtggcct ggagggtaca ggagctggtg aggattcagt ggcccctgct 121 gctccgggtg caggagcgct gagcagggag ggtgaggaag gcacagacct tgctcttgag 181 gatgaagggg agggctgcgc tgatgagcca gggacactgg agcaggtgtc cagaagtgag 241 gaggaagaga agctagtgca gccacacagg gagtgcagcc tggaggacag tgggccttgg 301 gctggagagg gggtcttcca gagcgacctc ctcctgcctc acatccatgg agaggaccag 361 gagccccccg acacccccgg ggaggcagag gaggatgatg aggaaggctg tgccagcaca 421 gacccagcag gggcagatga gggttcgggt cctgacaggc ccacggagga catgggacag 481 gatgctgagg acaccagtga ggagccccct gagaaggagg agctggccgg ggtccaggag 541 gcagagacag ccacagactg ccctgaagtt cttgaggagg gatgtgaaga ggccacgggt 601 gtcacaggtg gggaacaggt tgacctcagt gaaccacctg accacgagaa gaaaaccaac 661 caagaagtgg cagccgccac cctggaggac catgcacagg atgagtccgc cgaggagagc 721 tgccagattg tcccttttga gaatgactgc atggaggact tcgtgacttc cctcacagga 781 agcccctatg agttcttccc aactgagagc acctcttttt gcagcgagag ctgttctcct 841 ctttctgaat cagcgaaagg tttagaatca gagcaggcac caaagctggg gctgcgtgcg 901 gaggagaacc ccatggtggg ggctttgtgt ggccagtgtg gctccctaca gggtggagcg 961 gccgagggtc ccgcagcccc tgatgtggtg gtcgtgctgg aggaggaggc cttggatgat 1021 gcactggcca acccctatgt gatgggagtg ggcctgcccg gtcaggcggc ccctggagaa 1081 ggagggcagg ctgcatcgga cgccctgggt ggttatggct cgaaagaaga attgaactgt 1141 gaggcagagg gtggcctggt tcccgcggac aggaagaaca ccagcacgag ggtccggccc 1201 cactctggga aggtggccgg ctatgtccca gaaaccgtcc ctgaagaaac cggacctgag 1261 gcgggctcgt cagcccctgg cattggaggt gccgcagagg aggtgggaaa gacgcttttg 1321 tcattggagg ggaagccctt ggaagccagc agggccttgc cagcaaagcc cagggccttt 1381 actttatacc ctcggtcgtt ctccgtggaa ggccgagaga ttccagtgtc cgtgtaccag 1441 gagcctgagg ggtcagggtt ggatgaccac aggataaaga ggaaagagga caatctctct 1501 ctgtcgtgtg taattggctc ctctgggagt ttctcccaga gaaaccacct tccgtccagc 1561 ggcacctcca cgccttcttc catggtcgac atcccacctc ctttcgacct ggcctgcatc 1621 accaagaagc ccatcacaaa gagctctccc tcactcctga tcgagagcga ctccccggac 1681 aagtacaaga agaagaagtc atcctttaag cgcttcctgg cactgacgtt taagaagaag 1741 acggagaaca aattgcatgt ggatgtgaac gtgtcttcct ctaggtcctc ttcagagtcc 1801 agctaccacg ggccttccag gattctggaa gttgaccgga gaagcctcag caactcccct 1861 cagcttaagt ctcggactgg gaagctccgg gcttctgaat ccccctcctc cctcatcttt 1921 tatagagatg gcaagaggaa aggtgtcccc ttcagcagga cggtgtccag agtggagtcc 1981 tttgaagacc gctcccggcc gcccttcctg cccttgccac tgaccaagcc acggtccatc 2041 tccttcccca gcgctgacac ttcagactat gagaacattc cagccatgaa ctcggactat 2101 gagaatatcc agattccacc ccggagacct gccagggctg gcgcgttcac gaagctgttt 2161 gaagatcaga gcagagccct gtccacagca aacgaaaatg atggctacgt ggacatgagc 2221 agcttcaacg cctttgagag caaacagcag agtgcagacc aggacgcaga aagcgcctac 2281 acagagccct acaaagtctg tcccatctcg tcggcagccc ccaaagagga ccttacgtcg 2341 gatgaagagc agagaagctc ggaggaggag gacagtgctt caagagaccc cagtgtcacc 2401 cacaaggtgg aaggacagtc cagagccctt gtcatcgcac aggaactgct atcttcagag 2461 aaagcatacg tggagatgct ccagcactta aatctggatt tccatggagc tgtcatgagg 2521 gccttggatg acatggacca tgaaggcaga gacacattgg cccgggagga gctgaggcag 2581 ggcctgagtg aactcccagc catccacgac cttcatcaag gcatcctgga ggagctggag 2641 gaaaggctgt caaattggga gagccagcag aaggtagctg acgtcttcct ggcccgggag 2701 caggggtttg atcaccacgc cactcacatc ctgcagttcg acaggtacct aggtctgctc 2761 agtgagaatt gcctccactc tccccggctg gcagctgctg tccgtgaatt tgagcagagt 2821 gtacaaggag gcagccagac tgcgaagcat cggctgctgc gggtggttca acgcctcttc 2881 cagtaccaag tgctcctcac agactattta aacaaccttt gtccggactc cgccgagtac 2941 gacaacacac agggtgcact gagcctcatc tccaaagtca cagaccgtgc caacgacagc 3001 atggagcaag gggaaaacct gcagaagctg gtccacattg agcacagcgt ccggggccaa 3061 ggggatctcc tccagccagg aagggagttt ctgaaggaag ggacgctgat gaaagtaaca 3121 gggaaaaaca gacggccccg gcacctattt ctgatgaacg atgtgctcct gtacacctat 3181 ccccagaagg atgggaagta ccggctgaag aacacattgg ctgtggccaa catgaaggtc 3241 agccgccctg tgatggagaa agtgccctac gctctaaaga ttgagacttc cgagtcctgc 3301 ctgatgctgt ctgcgagctc ctgtgcagag agggacgagt ggtatggctg tctgagcaga 3361 gccctccctg aggactacaa ggcccaggcg ctggctgcat tccaccatag cgtggagata 3421 cgagagaggc tgggggttag ccttggggag aggcccccca ccctggtgcc tgtcacacac 3481 gtcatgatgt gcatgaactg cggctgcgac ttctccctca ccctgcggcg tcatcactgt 3541 cacgcctgtg gcaagatcgt gtgccggaac tgttcgcgga acaagtaccc gctgaagtac 3601 ctgaaggaca ggatggccaa ggtctgcgac ggctgcttcg gggagctgaa gaagcggggc 3661 agggctgtcc cgggcctgat gagagagcgg cctgtgagca tgagcttccc gctgtcttca 3721 ccccgcttct cgggcagtgc cttttcatcc gtcttccaga gcattaaccc ctcgaccttc 3781 aagaagcaga agaaagtccc ttcagccctg acagaggtgg ctgcctctgg agagggctct 3841 gccatcagtg gctatctcag ccggtgtaag aggggcaagc ggcactggaa gaagctctgg 3901 tttgtcatca aaggcaaagt tctctacacc tacatggcca gtgaggacaa agtggccttg 3961 gagagtatgc ctctgctagg cttcaccatt gctccagaaa aggaagaggg cagcagtgaa 4021 gtaggaccta tttttcacct ttaccacaag aaaaccctat tttatagctt caaagcagaa 4081 gataccaatt cagctcagag gtggatcgag gccatggaag atgcgagtgt gttatagcag 4141 ttatcaagca tgtggacttg taacaaattc ttaggtcaat atgtgaatgc ttttagaagc 4201 taagctgtgg ctcaactcat ccggacacac acctggattc agcaatgagg cctgaccttt 4261 tttgctataa ccgccccacc actcccctgc ccttgccaac atcttcatga atggaatcct 4321 taagggatat ttatggacct ctccttttct gtgttttcca cccctacccc cacccgccac 4381 ccagtaataa actatttcct taccccgcag tgagttaaaa tttagtaaga tgaagatgtg 4441 gaaaccaatg aaaagtacat ttagaaatgc aggcttttta gtagaaagaa gctcttacag 4501 tttttactca tgataaatct tatcaccttt caaaaattga ttgtggtgcc tcaggtgaaa 4561 tgagaagcta tcagtaacag ctactctcat cgaaagcact ttattatttt acggagctgc 4621 aacctccaat tttgtgtttt ctaagtgatt tacttaagtc aataacagat ggaatcctgt 4681 ggactaatgt gccaccagtt ttctaacaag ggtgtacata aaatggattt gtgcagacct 4741 ggctgtggct tgctggtgtg caagcacaca tcactttaga ggggctgcgc cccaccagat 4801 aggaagggga ggattttctc ctccagtcga ccttgtgacc tgtatactaa cataacttat 4861 taaaggaggg gtccctcctc ccccagagca gtcctcaaca ctgtcagtgc tggaaatgca 4921 gccactggca gatctggccc cccagacgtc accgcagggc ctctgaagag tcaaggtctg 4981 ctttaattta ttgtgtgcct ttctgtgttt acctcactca agctgacaac attgtttatg 5041 ggaatctatc cttcttttag acacacggta atccttgggc tgtattactg aaggcttttt 5101 attttttgag aggtgaaaaa aagagaaaac aagttagact ccaaaggtga attcctggtc 5161 ttggcagatg gctctgggaa cagcgaggga gcacagaagt cgtggcctga ggctgttcta 5221 tgggcacttg gggct //