LOCUS BC132782 5741 bp mRNA linear HUM 06-DEC-2007
DEFINITION Homo sapiens ELKS/RAB6-interacting/CAST family member 1, mRNA (cDNA
clone MGC:164413 IMAGE:40146804), complete cds.
ACCESSION BC132782
VERSION BC132782.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5741)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 5741)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Ambion
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 9 Row: E Column: 20.
FEATURES Location/Qualifiers
source 1..5741
/db_xref="H-InvDB:HIT000390835"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:164413 IMAGE:40146804"
/tissue_type="Brain, PCR rescued clones"
/clone_lib="NIH_MGC_308"
/note="Vector: pCR-XL-TOPO; Clone identification sequence
tag: GTTCGAGC"
gene 1..5741
/gene="ERC1"
/gene_synonym="Cast2"
/gene_synonym="ELKS"
/db_xref="GeneID:23085"
/db_xref="HGNC:HGNC:17072"
/db_xref="MIM:607127"
CDS 133..3483
/gene="ERC1"
/gene_synonym="Cast2"
/gene_synonym="ELKS"
/codon_start=1
/product="ELKS/RAB6-interacting/CAST family member 1"
/protein_id="AAI32783.1"
/db_xref="GeneID:23085"
/db_xref="HGNC:HGNC:17072"
/db_xref="MIM:607127"
/translation="MYGSARSVGKVEPSSQSPGRSPRLPRSPRLGHRRTNSTGGSSGS
SVGGGSGKTLSMENIQSLNAAYATSGPMYLSDHENVGSETPKSTMTLGRSGGRLPYGV
RMTAMGSSPNIASSGVASDTIAFGEHHLPPVSMASTVPHSLRQARDNTIMDLQTQLKE
VLRENDLLRKDVEVKESKLSSSMNSIKTFWSPELKKERALRKDEASKITIWKEQYRVV
QEENQHMQMTIQALQDELRIQRDLNQLFQQDSSSRTGEPCVAELTEENFQRLHAEHER
QAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTR
RLAEAEMHVHHLESLLEQKEKENSMLREEMHRRFENAPDSAKTKALQTVIEMKDSKIS
SMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKVEQLKEELSSK
EAQWEELKKKAAGLQAEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKE
SLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDML
DVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAE
KERTIERLKEQRDRDEREKQEEIDNYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHA
SSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEAALEARASPEMSDRIQHL
EREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKH
KEQVEKKKSAQMLEEARRREDNLNDSSQQLQDSLRKKDDRIEELEEALRESVQITAER
EMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRA
ERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQL
KQQTQNRMKLMADNYEDDHFKSSHSNQTNHKPSPDQIIQPLLELDQNRSKLKLYIGHL
TTLCHDRDPLILRGLTPPASYNLDDDQAAWENELQKMTRGQLQDELEKGERDNAELQE
FANAILQQIADHCPDILEQVVNALEESS"
BASE COUNT 1704 a 1290 c 1467 g 1280 t
ORIGIN
1 gattggacag ctggggacct tcttctgatt aaccttaaac caacttgtag ccatagagac
61 acctcacaag gttcccattt ttgttgttgt tgttgttgat tttctgctca cacctttcct
121 gaccttgcaa ccatgtatgg aagtgcccgc tctgttggga aggtggagcc gagcagccag
181 agccctgggc gttcacccag gcttccacgt tcccctcgct tgggtcaccg tcgaaccaac
241 agtacgggag ggagttcggg aagcagtgtt ggaggtggca gtgggaaaac cctttcaatg
301 gaaaatatac aatctttaaa tgctgcctat gccacctctg gccctatgta tctaagtgac
361 catgaaaatg tgggttcaga aacacctaaa agcaccatga cacttggccg ttctggggga
421 cgtctgcctt acggtgttcg gatgactgct atgggtagta gccccaatat agctagcagt
481 ggggttgcta gtgacaccat agcatttgga gagcatcacc tccctcctgt gagtatggca
541 tccactgtac ctcactccct tcgtcaggcg agagataaca caatcatgga tctgcagaca
601 cagctgaagg aagtattaag agaaaatgat ctcttgcgga aggatgtgga agtaaaggag
661 agcaaattga gttcttcaat gaatagcatc aagaccttct ggagcccaga gctgaagaag
721 gaacgagccc tgagaaaaga tgaagcttcc aaaatcacca tttggaagga acagtacaga
781 gttgtacagg aggaaaacca gcacatgcag atgacaatcc aggctctcca ggatgaattg
841 cggatccaga gggacctgaa tcagctgttt cagcaggata gtagcagcag gactggcgaa
901 ccttgtgtag cagagctgac agaggagaac tttcagaggc ttcatgctga gcatgagcgg
961 caggccaaag agctgtttct tcttcgaaag acattggagg aaatggagct gcgtattgag
1021 actcaaaagc agaccctaaa tgctcgggat gaatccatta agaagcttct ggaaatgttg
1081 cagagcaaag gactttctgc caaggctacc gaggaagacc atgagagaac aagacgactg
1141 gcagaggcag agatgcacgt tcatcaccta gaaagccttt tggagcagaa ggaaaaagag
1201 aacagtatgt tgagagagga gatgcatcga aggtttgaga atgctcctga ttctgccaaa
1261 acaaaagctc tgcaaactgt tattgagatg aaggattcaa aaatttcctc tatggagcgt
1321 gggcttcgag acctggaaga ggaaattcag atgctgaaat cgaatggtgc tttgagtact
1381 gaggaaaggg aagaagaaat gaagcaaatg gaagtgtatc ggagccattc taaatttatg
1441 aaaaataagg tagaacaact gaaggaggaa ctaagttcga aagaggctca atgggaggag
1501 ctgaaaaaga aagcggctgg tcttcaggct gagattggcc aggtgaaaca ggagctgtcc
1561 agaaaggaca cagaactact cgccctgcag acaaagctag aaacactcac aaaccagttc
1621 tcagatagta aacagcacat tgaagtgttg aaggagtcct tgactgctaa ggagcagagg
1681 gctgccatcc tgcagactga ggtggatgct ctccgattgc gtttggaaga gaaggaaacc
1741 atgttgaata aaaagacaaa acaaattcag gatatggctg aagagaaggg gacacaagct
1801 ggagagatac atgacctcaa ggacatgttg gatgtgaagg agcggaaggt taatgttctt
1861 cagaagaaga ttgaaaatct tcaagagcag cttagagaca aggaaaagca gatgagcagc
1921 ttgaaagaac gggtcaaatc cttgcaggct gacaccacca acactgacac tgccttgaca
1981 actttggagg aggcccttgc agagaaagag cggacaattg aacgcttaaa ggagcagagg
2041 gacagagatg agcgagagaa gcaagaggaa attgataact acaaaaaaga tcttaaagac
2101 ttgaaggaaa aagtcagcct gttgcaaggc gacctttcag agaaagaggc ttcacttttg
2161 gatctgaaag agcatgcttc ttctctggca tcctcaggac tgaaaaagga ctcacggctt
2221 aagacactag agattgcttt ggagcagaag aaggaggagt gtctgaaaat ggaatcacaa
2281 ttgaaaaagg cacatgaggc agcattggaa gccagagcca gtccagagat gagtgaccga
2341 atacagcact tggagagaga gatcaccagg tacaaagatg aatctagcaa ggcccaggca
2401 gaagttgatc gactcttaga aatcttgaag gaggtggaaa atgagaagaa tgacaaagat
2461 aagaagatag ctgagttgga aaggcaagtg aaagaccaga ataagaaggt agcaaatctg
2521 aagcacaagg aacaggtgga aaaaaagaag agtgcacaaa tgttagagga ggcgcgacga
2581 cgggaggaca atctcaacga cagctctcag cagctacagg acagtctccg taagaaggat
2641 gacaggattg aagagctgga agaagcacta agagaaagtg tacagataac tgcagagcgg
2701 gaaatggtgc tagcacaaga ggaatcagcc aggaccaatg ctgaaaaaca ggtggaggag
2761 ttactgatgg ccatggagaa ggtaaagcag gaactagaat ccatgaaagc aaagctgtcc
2821 tccacccagc agtctctggc agaaaaggaa actcacttga ctaatcttcg ggcagagaga
2881 aggaaacact tagaggaagt tctggagatg aagcaagaag ctcttctggc tgccattagt
2941 gaaaaagacg ccaatatagc tctcttggag ctttcgtcct ctaagaagaa gacccaagag
3001 gaagtggctg ccctgaagcg ggagaaggat cgtctggtac agcagcttaa gcagcagacg
3061 caaaatcgaa tgaagctaat ggccgacaac tacgaggatg accacttcaa atcctcccat
3121 tccaatcaaa caaatcacaa gccctcccca gaccagatca tccagcccct cttagaactt
3181 gaccaaaata gaagtaaatt aaagttgtac attggacacc tgacaaccct ctgccatgac
3241 cgagaccccc tgatcctccg tggactcact ccaccagctt cctataactt ggacgatgac
3301 caggcggctt gggagaatga gctgcagaag atgacccggg ggcagcttca ggatgagtta
3361 gagaaaggtg aacgggacaa tgcagaactg caggagtttg ccaacgccat tcttcagcag
3421 atagcagacc attgtcccga catcctagag caagtggtca acgccctgga agagtcctct
3481 tgaccctgct ttatggggaa gcctgaggta gtcaacccag gagccaagaa aagagaacta
3541 cgaggaacag gtgcccggaa ccttcttggc accaaacact acaaacttca tcccaacttg
3601 ctcacttgaa gaagtgtgat tccagcaccg tttctacatc tgccatctta ctctgccttt
3661 ctgctttgga tgtggtctct acactaacct tcttgatgtc cagggtagat aaagggtcga
3721 atctctctga agaactgcca cctggtcatc agcagtggag aactgtggga gctggtggct
3781 ctgccctgac agagagccat ggagcagagg agcctctcac ctcctgtcct ctgacatgag
3841 aatgaaacca ggaatggact tggagttcaa caggctgaga ggatgcctcc aatggaccag
3901 agagctgagt gttctaatat cacaataggt gctttctcct aaaagggcaa aaaacaatct
3961 caaaaagatt agaaaaagag aaggggggaa gggaagagaa aatcgactct tctttttact
4021 gtctcttctg cttactttcc acatgagatg ctttgtaccg gggagctgtg agcaggcctc
4081 acgatggctt gggagcactc gttctcccaa ggtctgagtc ttcatccagc cctgcctgtc
4141 tgttgcagcc ttcctcactc tgttcctcgg ccagttaaca agaagatggt gtgaggtgtt
4201 ctccaccagt ctctcctgtt tgagactgtt gacgttatca tactgaggtg ttagatcaaa
4261 tatctctaat tgaagaacat gtgaggttga aagagcacca gccagggcaa catagcgcga
4321 ccctgtctct acaaaaaatt aaaaagagaa catacaaagt tgacatatga gaccctgttg
4381 tccccgcctg cagctttgcc ccagtaacag atgcccgttg ctcttgggct ggtttcccct
4441 gaacacctcc aagaggctgc ctgccttgcc agcacccgtg tcctgagctc ctgcagccca
4501 gtggctgctg aagttgtgat ccctcactca ccctgctagc tttgcccttg actcgtcttc
4561 tctgaacctc agcctcgtgc attgcctgga accttcttct agcataaatg aaggtttttc
4621 ctcctacaca cattccttcc tcggttattt cattcagaga atatttatga aatgcctact
4681 gtgtgcaagt catccatcct tgaaaaggcc acttctcagt gagggagaga tgtagtggat
4741 tctgtgagac atacctgctg gagttgaagc agtaaatagc atgtccttcc cctccccgat
4801 cttaaggtgt gttttctaga aaagttccct aatggaattc atgagtttgg gggggctcag
4861 tcacccgctt gcctgtagga ttccatttga tgattctgga tttttgctgt ttgttattgc
4921 ccttagaggg gctctgagta tctacttgtg ggtggccatt tcctgacatc tgcatgtacc
4981 tcgtggaatt cagccagctt catgttgcaa atcagaaagc tgaccccaag actgcaaatc
5041 aatgaaggta ttggcattgt taaggacgta gcgtagacaa cagcagtcat aaataattag
5101 gcaggaactt aacccaaatc tagttctttg accacctcta ccaccagaac ccagcagaca
5161 ctcacatctc ctgataagag ttgctggact cgatgttttt gttttgcatt ttctcctctc
5221 cttccccact tactcagaga atttaaagtc tgtagagtca gcacagcccc atcagtccag
5281 gaacttccca ccaccagccc ttgactgtcc cattaactga catggtcaga tttccagctc
5341 cccctactcc ctgctgtgaa acaatccctc tccctgtgag aggaaactgt ggagcgtttc
5401 ttatcgaagg ttaaatggac tctgctcata aacctcttac tgagatgctt cctgatagcc
5461 aggctggcca gagaggggtg caggggttag atagtaagtg gtggtcgttt gtggtcagtt
5521 acctcaattc tgttcattgc agtgcccgta aaccatgtag aaagctccca gcactgaaag
5581 gcaggagtgt tagcatctcg ctttatccac cataacgtaa agaactgcgg tgtgataaca
5641 gccttcacag ggccacggtg gaaccaagac agcaggcgag gccatgccta aacaagtggt
5701 ctggcacggg cactggccag ctgctctctc caagcaggtg g
//