LOCUS BC132769 2568 bp mRNA linear HUM 06-DEC-2007
DEFINITION Homo sapiens protocadherin gamma subfamily A, 9, mRNA (cDNA clone
MGC:164400 IMAGE:40146791), complete cds.
ACCESSION BC132769
VERSION BC132769.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2568)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2568)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 9 Row: E Column: 7.
FEATURES Location/Qualifiers
source 1..2568
/db_xref="H-InvDB:HIT000390822"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:164400 IMAGE:40146791"
/tissue_type="Brain, cerebellum, PCR rescued clones"
/clone_lib="NIH_MGC_311"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: TCGTTGAG"
gene 1..2568
/gene="PCDHGA9"
/gene_synonym="PCDH-GAMMA-A9"
/db_xref="GeneID:56107"
/db_xref="HGNC:HGNC:8707"
/db_xref="MIM:606296"
CDS 22..2508
/gene="PCDHGA9"
/gene_synonym="PCDH-GAMMA-A9"
/codon_start=1
/product="protocadherin gamma subfamily A, 9"
/protein_id="AAI32770.1"
/db_xref="GeneID:56107"
/db_xref="HGNC:HGNC:8707"
/db_xref="MIM:606296"
/translation="MAAPTKCQLRGRLVLLCSLLGMLWEARASQIRYSVPEETEKGYI
VGNISKDLALEPRELAERRVRIVSRGRTQLFSLNPRSGTLVTAGRIDREELCAQSPRC
LVNFKVLVEDRVKLYGIEIEVTDINDSAPKFQAESLEVKINEIAVPGARYPLPEAIDP
DVGVNSLQSYQLSPNHHFSLNVQTGDNGAINPELVLERALDREEATAHHLVLTASDGG
EPRRSSTVRIHVTVLDTNDNAPVFAQRIYRVKVLENVPPGTWLLTATASDLDEGINGK
VAYKFWKINEKQSLLFQLNENTGEISTAKSLDYEECSFYEMEIQAEDGGGLKGWTKVL
ISVEDVNDNRPEVTITSLFSPVREDAPQGTVILLFNAHDRDSGKNGQVVCSIQENLSF
TLENSEEDYYRLLTAQILDREKASEYNITVTATDRGTPPLSTEIHITLQVTDINDNPP
AFSQASYSVYLPENNARGTSIFSVIAYDPDSNENSRVIYSLAEDTIQGSPLSTYVSIN
SDTGVLYALCSFDYEQFRDLQMQVTASDSGSPPLSSNVSLRLFVLDQNDNAPEILYPA
LPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLFKASEPGLFSVGLHTG
EVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAIADSIPDILADLGSLQIPA
DLEASDLTLYLVVAVAVVSCVFLTFVITLLALRLRHWHSSHLLRATSDGLAGVPTSHF
VGVDGVRAFLQTYSQEFSLTADSRKSHLIFPQPNYADTLISQQSCEKNEPLCVSVDSK
FPIEDTPLVPVSSFFFFLSFLFLFFVLFCF"
BASE COUNT 630 a 672 c 640 g 626 t
ORIGIN
1 aaattccaaa gcgaggcagc aatggcagct ccaaccaaat gccagctccg cggaagatta
61 gtcctgctat gctcgctcct ggggatgcta tgggaggcca gggccagtca gattcgctac
121 tcagtgcctg aagagacaga aaagggctat attgtgggca acatctccaa ggacctggct
181 ctggagcccc gggagctggc ggagcgccga gtccgcatcg tctctagagg taggacgcag
241 cttttctctc tgaacccgcg cagcggcacc ttggtcaccg cgggtaggat agaccgggag
301 gagctctgtg ctcagagccc gcggtgtctg gtgaacttta aagtcctggt tgaagacaga
361 gtgaaactgt acggaataga aatagaagta actgatatta acgacagcgc cccaaagttc
421 caggccgaaa gtctggaagt aaaaattaac gaaatcgcgg ttcctggagc acgttatcca
481 cttccagaag ctattgatcc ggatgttggc gtgaactccc tccagagcta ccagctcagc
541 cccaatcacc acttctccct gaacgtgcag actggagaca atggagccat aaacccagag
601 ctggtgctgg agcgcgccct ggacagggag gaggcaactg cccaccacct ggtcctcacg
661 gcctcggatg gcggcgagcc gcgtcgctcc agcacagtgc gcatccatgt gacagtgttg
721 gatacaaatg ataatgcccc ggtttttgct caacggattt accgagttaa agtccttgag
781 aacgtgcccc caggcacctg gctgcttact gcaacagcca gcgacctgga tgagggaatc
841 aacggaaaag tggcatacaa attctggaaa attaatgaaa aacaatctct gctattccag
901 cttaatgaaa atactgggga aatatcaaca gcaaaaagtc tagattatga agaatgttca
961 ttttatgaaa tggaaataca agctgaagat ggtgggggat tgaaagggtg gacaaaagtg
1021 ctcatttcgg tggaagatgt aaatgacaat agacctgaag tgaccattac atctctgttt
1081 agcccagtga gagaagacgc acctcaggga acagtaattc ttcttttcaa tgctcatgac
1141 cgagactccg ggaagaatgg tcaagttgtc tgttctatcc aggagaatct atcttttaca
1201 ttagaaaatt cagaagaaga ttattacaga ttgttgacgg cccaaattct tgaccgagaa
1261 aaagcctcag aatataatat cacggtgact gcaacagaca gaggaactcc gcccctgtcc
1321 acagaaattc acatcaccct gcaagtgact gacatcaatg ataatccacc tgctttctct
1381 caagcctcct actcagtcta cctcccggaa aacaacgcca gaggtacttc catcttctcc
1441 gtgattgcct atgaccctga tagcaatgag aattctagag ttatttactc cttggcagag
1501 gataccatcc aagggtctcc tctctccacc tatgtctcta ttaactcaga cactggtgtg
1561 ctgtatgctc tgtgctcctt tgactatgag cagtttagag atttgcaaat gcaggtgacg
1621 gcaagtgaca gtggaagccc accacttagc agcaatgtgt cattgagact gtttgttttg
1681 gaccagaatg acaatgcccc agaaatcctg taccctgccc tccccactga tggttctact
1741 ggtgtggagc tggcaccccg ctctgcagag cctggctacc tggtgaccaa ggtggtggca
1801 gtggacagag actcaggcca gaatgcttgg ctctcctacc gcctattcaa ggccagtgag
1861 ccagggctct tctcggtggg gctgcacaca ggtgaagtgc gcacagctcg ggccctgcta
1921 gatagagatg cgctcaaaca gagccttgtg gtggctgtac aggaccatgg ccagccccct
1981 ctctcggcca ctgtcacgct cacagtagcc atagctgaca gcatcccaga catcctggct
2041 gacctgggca gtcttcagat ccctgcagac ctggaggcct cagaccttac cctctacctc
2101 gttgtggctg tggcagtcgt ctcctgtgtc ttcctcacct tcgttatcac gctgctggcc
2161 ctcaggctga ggcactggca ctcctcgcat ctgctgcggg ctaccagtga tgggttggct
2221 ggtgtgccca cctcacactt tgtgggtgta gatggggttc gagctttcct acagacctat
2281 tctcaggagt tctccctcac cgctgactca aggaagagtc acctgatctt cccccagccc
2341 aactatgcag acacactcat cagccagcag agctgtgaga aaaatgagcc tttgtgcgtc
2401 tctgttgatt ccaagtttcc tatagaagac acccctttgg ttccggtgag ttcatttttt
2461 ttctttcttt cttttctttt tttgtttttt gttttgtttt gtttttgaga cagagtctta
2521 ctctgttacc caggctggaa tgcagtggtg tgatctcggc tcattgca
//