LOCUS BC132737 3921 bp mRNA linear HUM 06-DEC-2007
DEFINITION Homo sapiens contactin associated protein-like 3, mRNA (cDNA clone
MGC:164368 IMAGE:40146759), complete cds.
ACCESSION BC132737
VERSION BC132737.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3921)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3921)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 9 Row: C Column: 23.
FEATURES Location/Qualifiers
source 1..3921
/db_xref="H-InvDB:HIT000390790"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:164368 IMAGE:40146759"
/tissue_type="Pooled, cerebellum, kidney, placenta,
testis, lung, colon, liver, heart, thyroid, bladder,
uterus, PCR rescued clones"
/clone_lib="NIH_MGC_363"
/lab_host="DH10B"
/note="Vector: pCR-XL-TOPO; Clone identification sequence
tag: TCGCAGCG"
gene 1..3921
/gene="CNTNAP3"
/gene_synonym="CASPR3"
/gene_synonym="CNTNAP3A"
/gene_synonym="RP11-138L21.1"
/gene_synonym="RP11-290L7.1"
/db_xref="GeneID:79937"
/db_xref="HGNC:HGNC:13834"
/db_xref="MIM:610517"
CDS 145..3768
/gene="CNTNAP3"
/gene_synonym="CASPR3"
/gene_synonym="CNTNAP3A"
/gene_synonym="RP11-138L21.1"
/gene_synonym="RP11-290L7.1"
/codon_start=1
/product="CNTNAP3 protein"
/protein_id="AAI32738.1"
/db_xref="GeneID:79937"
/db_xref="HGNC:HGNC:13834"
/db_xref="MIM:610517"
/translation="MASVAWAVLKVLLLLPTQTWSPVGAGNPPDCDAPLASALPRSSF
SSSSELSSSHGPGFSRLNRRDGAGGWTPLVSNKYQWLQIDLGERMEVTAVATQGGYGS
SDWVTSYLLMFSDGGRNWKQYRREESIWGFPGNTNADSVVHYRLQPPFEARFLRFLPL
AWNPRGRIGMRIEVYGCAYKSEVVYFDGQSALLYRLDKKPLKPIRDVISLKFKAMQSN
GILLHREGQHGNHITLELIKGKLVFFLNSGNAKLPSTIAPVTLTLGSLLDDQHWHSVL
IELLDTQVNFTVDKHTHHFQAKGDSSYLDLNFEISFGGIPTPGRSRAFRRKSFHGCLE
NLYYNGVDVTELAKKHKPQILMMGNVSFSCPQPQTVPVTFLSSRSYLALPGNSGEDKV
SVTFQFRTWNRAGHLLFGELRRGSGSFVLFLKDGKLKLSLFQPGQSPRNVTAGAGLND
GQWHSVSFSAKWSHMNVVVDDDTAVQPLVAVLIDSGDTYYFGGCLDNSSGSGCKSPLG
GFQGCLRLITIGDKAVDPILVQQGALGSFRDLQIDSCGITDRCLPSYCEHGGECSQSW
DTFSCDCLGTGYTGETCHSSLYEQSCEAHKHRGNPSGLYYIDADGSGPLGPFLVYCNM
TDAAWTVVQHGGPDAVTLRGAPSGHPRSAVSFAYAAGAGQLRSAVNLAERCEQRLALR
CGTARRPDSRDGTPLSWWVGRTNETHTYWGGSLPDAQKCTCGLEGNCIDSQYYCNCDA
GRNEWTSDTIVLSQKEHLPVTQIVMTDAGRPHSEAAYTLGPLLCRGDQSFWNSASFNT
ETSYLHFPAFHGELTADVCFFFKTTVSSGVFMENLGITDFIRIELRAPTEVTFSFDVG
NGPCEVTVQSPTPFNDNQWHHVRAERNVKGASLQVDQLPQKMQPAPADGHVRLQLNSQ
LFIEISAYFATGSSMTYHFQEHYTLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPS
LLLYVSSFYEEYLSVILANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINRE
EAVVMVEVNQSAKKQVILSSGTEFNAVKSLILGKVLEAAGADPDTRRAATSGFTGCLS
AVRFGRAAPLKAALRPSGPSRVTVRGHVAPMARCAAGAASGSPARELAPRLAGGAGRS
GPADEGEPLVNADRRDSAVIGGVIAVVIFILLCITAIAIRIYQQRKLRKENESKVSKK
EEC"
BASE COUNT 931 a 1004 c 1077 g 909 t
ORIGIN
1 gccagtgcgt gaggaagaga gctagagact ggacacggga gacagagcag cgtcagagcc
61 gcgcagggga cgggagtgag agcaggagcg acgcagagcg gccgtcgccg tgcccgggtc
121 tcagggcgcc tggctgaagt gagcatggct tcagtggcct gggccgtcct caaggtgctg
181 ctgcttctcc ccactcagac ttggagcccc gtgggagcag gaaatccacc tgactgtgat
241 gccccactgg cctctgcctt gcctaggtca tccttcagca gctcctcaga gctgtccagc
301 agccacggcc cggggttttc aaggcttaat cgaagagatg gagctggtgg ctggactcca
361 cttgtgtcaa ataaatacca atggctgcaa attgaccttg gagagagaat ggaggtcact
421 gctgtcgcca cccaaggagg atatgggagc tctgactggg tgaccagcta cctcctgatg
481 ttcagtgatg gtgggagaaa ctggaagcag tatcgccgag aagaaagcat ctggggtttt
541 ccaggaaaca caaacgcaga cagtgtggtg cactacagac tccagcctcc ctttgaagcc
601 aggttcctgc gctttctccc tttagcctgg aaccctaggg gcaggattgg gatgcggatc
661 gaagtgtacg gatgtgcata taaatctgag gtggtttatt ttgatggaca aagtgctctg
721 ctgtatagac ttgataaaaa acctttaaaa ccaataagag acgttatttc tttgaaattt
781 aaagccatgc agagcaatgg aattctactt cacagagaag gacaacatgg aaatcacatt
841 actctggaat taattaaagg aaagcttgtc ttttttctta attcaggcaa tgctaagctg
901 ccttccacta ttgctcctgt gaccctcacc ctgggcagcc tgctggacga ccagcactgg
961 cattccgtcc tcatcgagct cctcgacacg caggtcaact tcaccgtgga caaacacact
1021 catcatttcc aagcaaaggg agattccagt tacttggatc ttaattttga gatcagcttt
1081 gggggaattc cgacacccgg aagatcgcgg gcattcagac gtaaaagctt tcatgggtgt
1141 ttagaaaatc tttattataa tggagtggat gttaccgaat tagccaagaa acacaaacca
1201 cagatcctca tgatgggaaa tgtgtccttc tcatgtccac agccacagac tgtccctgtg
1261 acttttctga gctccaggag ttatctggct ctgccaggca actctgggga ggacaaagtg
1321 tctgtcactt ttcaatttcg aacgtggaac agagcaggac atttgctttt cggcgaactt
1381 cgacgtggtt cagggagttt cgtcctcttt cttaaggatg gcaagctcaa actgagtctc
1441 ttccagccgg gacagtcacc aaggaatgtc acagcaggtg ctggattaaa cgatgggcag
1501 tggcactctg tgtccttctc tgccaagtgg agccatatga atgtggtggt ggacgatgac
1561 acagctgttc agcccctggt ggctgtgctc attgattcag gtgacaccta ttattttgga
1621 ggctgcctgg acaacagctc tggctctgga tgtaaaagcc ccctgggagg gtttcagggc
1681 tgcctaaggc tcatcaccat tggtgacaaa gcggtggatc ccatcttagt acagcagggg
1741 gcgctgggga gtttcaggga cctccagata gactcctgcg gcatcacaga caggtgcttg
1801 cccagctact gtgagcatgg gggcgagtgt tcccagtcgt gggacacctt ctcctgtgac
1861 tgtctaggca caggctatac gggcgagacc tgccattcct ctctctacga gcagtcttgt
1921 gaagcccaca agcaccgagg gaacccgtct gggctttact atattgatgc agatggaagt
1981 ggccccctgg gaccatttct tgtgtactgc aatatgacag acgccgcgtg gacggtggtg
2041 cagcacggtg gccccgacgc ggtgaccctc cgaggtgccc ccagcgggca cccgcgctcg
2101 gctgtgtcct tcgcgtacgc agcgggcgcg gggcagctgc ggtccgcggt gaacctggcg
2161 gagcgctgcg agcagaggct ggctctgcgc tgcgggacgg cgcggcgccc ggactcacga
2221 gatggaaccc cactgagctg gtgggttgga agaaccaatg aaacacacac ctactgggga
2281 ggttctctgc ctgatgctca aaagtgtact tgtggattag aggggaactg cattgattct
2341 cagtattact gcaactgtga tgctggccga aatgaatgga ctagtgacac aatagtcctt
2401 tcccaaaagg agcacctgcc agtcactcag attgtgatga cagacgcagg ccgaccacat
2461 tccgaagcag cttatacact ggggccactg ctctgccgcg gagatcagtc attctggaat
2521 tcagcttcct tcaacactga gacttcatac cttcatttcc ctgctttcca cggagaactc
2581 actgctgacg tgtgcttctt ttttaagacc acagtttcct ccggggtgtt tatggagaac
2641 ctggggatca cagatttcat caggattgag ctgcgtgctc ccacagaagt gaccttttcc
2701 ttcgatgtgg ggaatggacc ttgtgaggtc acggtgcagt cacccactcc ctttaatgac
2761 aatcagtggc accacgtgag ggcagagaga aatgttaaag gagcgtctct tcaagttgat
2821 cagcttcctc agaagatgca gcctgcccct gctgatgggc acgttcgttt acagctcaac
2881 agccagctct tcattgagat ttccgcatat tttgcaactg gctcctcaat gacataccat
2941 tttcaagaac attacacttt aagtgaaaac tccagctctc tcgtttcttc attacacaga
3001 gatgtaacat tgaccagaga aatgatcaca ctgagcttcc gaaccacacg aactccgagc
3061 ttattgctgt atgtgagctc tttctatgag gaataccttt cagttatcct cgccaacaat
3121 ggaagtttgc agattaggta caagctagat agacatcaaa atcctgatgc atttaccttt
3181 gattttaaaa acatggctga tgggcaactt caccaagtga agattaacag agaagaagct
3241 gtggtcatgg tagaggttaa ccagagcgca aagaaacaag tcatcttgtc ctcagggaca
3301 gaattcaacg ctgtcaaatc tctcatattg ggaaaggttt tagaggctgc cggcgcggac
3361 ccggacacaa ggcgggcggc gactagtggc ttcaccggct gcctctcggc ggtgcgcttc
3421 ggccgcgctg ctcccctgaa ggcggcgctg cgccccagcg gcccctcccg ggtcaccgtc
3481 cgcggccacg tggcccctat ggcccgctgc gcagcggggg cggcgtccgg ctccccggcg
3541 cgggaactgg ctccccgact cgcggggggc gcaggtcgtt ctggaccagc ggatgaggga
3601 gagcccttgg ttaatgcaga cagaagagac tctgctgtca tcggaggtgt gatagcagtg
3661 gtgatattta ttttgctttg catcactgcc atagccatac gcatctatca acagagaaag
3721 ttacgcaaag aaaatgagtc aaaagtctca aaaaaagaag agtgctagga cagctctaaa
3781 cagtgagctc gatgtgcaaa acgcagtcca tgaaaaccag aaagagcgag tcttctgatt
3841 ggcagctgtg gctgtctcta tcatcgtgac tgtggacttc cctgctgttg ccatcagggt
3901 gcacacaagc aggtgcagtg c
//