LOCUS BC132721 5015 bp mRNA linear HUM 06-DEC-2007
DEFINITION Homo sapiens jumonji, AT rich interactive domain 1D, mRNA (cDNA
clone MGC:164352 IMAGE:40146743), complete cds.
ACCESSION BC132721
VERSION BC132721.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5015)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 5015)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 9 Row: C Column: 7.
FEATURES Location/Qualifiers
source 1..5015
/db_xref="H-InvDB:HIT000390774"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:164352 IMAGE:40146743"
/tissue_type="Pooled, cerebellum, kidney, placenta,
testis, lung, colon, liver, heart, thyroid, bladder,
uterus, PCR rescued clones"
/clone_lib="NIH_MGC_363"
/lab_host="DH10B"
/note="Vector: pCR-XL-TOPO; Clone identification sequence
tag: AACCTATG"
gene 1..5015
/gene="JARID1D"
/gene_synonym="KDM5D"
/db_xref="GeneID:8284"
/db_xref="HGNC:HGNC:11115"
/db_xref="MIM:426000"
CDS 212..4831
/gene="JARID1D"
/gene_synonym="KDM5D"
/codon_start=1
/product="jumonji, AT rich interactive domain 1D"
/protein_id="AAI32722.1"
/db_xref="GeneID:8284"
/db_xref="HGNC:HGNC:11115"
/db_xref="MIM:426000"
/translation="MEPGCDEFLPPPECPVFEPSWAEFQDPLGYIAKIRPIAEKSGIC
KIRPPADWQPPFAVEVDNFRFTPRVQRLNELEAQTRVKLNYLDQIAKFWEIQGSSLKI
PNVERKILDLYSLSKIVIEEGGYEAICKDRRWARVAQRLHYPPGKNIGSLLRSHYERI
IYPYEMFQSGANHVQCNTHPFDNEVKDKEYKPHSIPLRQSVQPSKFSSYSRRAKRLQP
DPEPTEEDIEKHPELKKLQIYGPGPKMMGLGLMAKDKDKTVHKKVTCPPTVTVKDEQS
GGGNVSSTLLKQHLSLEPCTKTTMQLRKNHSSAQFIDSYICQVCSRGDEDDKLLFCDG
CDDNYHIFCLLPPLPEIPRGIWRCPKCILAECKQPPEAFGFEQATQEYSLQSFGEMAD
SFKSDYFNMPVHMVPTELVEKEFWRLVSSIEEDVTVEYGADIHSKEFGSGFPVSNSKQ
NLSPEEKEYATSGWNLNVMPVLDQSVLCHINADISGMKVPWLYVGMVFSAFCWHIEDH
WSYSINYLHWGEPKTWYGVPSLAAEHLEEVMKMLTPELFDSQPDLLHQLVTLMNPNTL
MSHGVPVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLPAGRQCIEHYR
RLRRYCVFSHEELICKMAAFPETLDLNLAVAVHKEMFIMVQEERRLRKALLEKGVTEA
EREAFELLPDDERQCIKCKTTCFLSALACYDCPDGLVCLSHINDLCKCSSSRQYLRYR
YTLDELPTMLHKLKIRAESFDTWANKVRVALEVEDGRKRSFEELRALESEARERRFPN
SELLQRLKNCLSEVEACIAQVLGLVSGQVARMDTPQLTLTELRVLLEQMGSLPCAMHQ
IGDVKDVLEQVEAYQAEAREALATLPSSPGLLRSLLERGQQLGVEVPEAHQLQQQVEQ
AQWLDEVKQALAPSAHRGSLVIMQGLLVMGAKIASSPSVDKARAELQELLTIAERWEE
KAHFCLEARQKHPPATLEAIIRETENIPVHLPNIQALKEALTKAQAWIADVDEIQNGD
HYPCLDDLEGLVAVGRDLPVGLEELRQLELQVLTAHSWREKASKTFLKKNSCYTLLEV
LCPCADAGSDSTKRSRWMEKALGLYQCDTELLGLSAQDLRDPGSVIVAFKEGEQKEKE
GILQLRRTNSAKPSPLAPSLMASSPTSICVCGQVPAGVGVLQCDLCQDWFHGQCVSVP
HLLTSPKPSLTSSPLLAWWEWDTKFLCPLCMRSRRPRLETILALLVALQRLPVRLPEG
EALQCLTERAIGWQDRARKALASEDVTALLRQLAELRQQLQAKPRPEEASVYTSATAC
DPIREGSGNNISKVQGLLENGDSVTSPENMAPGKGSDLELLSSLLPQLTGPVLELPEA
IRAPLEELMMEGDLLEVTLDENHSIWQLLQAGQPPDLDRIRTLLELEKFEHQGSRTRS
RALERRRRRQKVDQGRNVENLVQQELQSKRARSSGIMSQVGREEEHYQEKADRENMFL
TPSTDHSPFLKGNQNSLQHKDSGSSAACPSLMPLLQLSYSDEQQL"
BASE COUNT 1207 a 1243 c 1384 g 1181 t
ORIGIN
1 gcgacggctc tgtgactgtt ttcctctggt aaaatcgctc ttgcgtcctc agcgtttatc
61 tcaggtgcgg aaggtctcac aggtttggaa atagcgccgg aaaaatcgat ccgcggagtg
121 agacggctcg taccacactg tagggcccgg aggtcaagat ggtggctgta aaactaggat
181 ccctgacgat tgcttagcat taaggcccga catggaaccg gggtgtgacg agttcctgcc
241 gccaccggag tgcccggttt ttgagcctag ctgggctgaa ttccaagacc cgcttggcta
301 cattgcgaaa ataaggccca tagcagagaa gtctggcatc tgcaaaatcc gcccacccgc
361 ggattggcag cctccttttg cagtagaagt tgacaatttc agatttactc ctcgcgtcca
421 aaggctaaat gaactggagg cccaaactag agtgaaattg aactatttgg atcagattgc
481 aaaattctgg gaaattcaag gctcctcttt aaagattccc aatgtggagc ggaagatctt
541 ggacctctac agccttagta agattgtgat tgaggaaggt ggctatgaag ccatctgcaa
601 ggatcgtcgg tgggctcgag ttgcccagcg tctccactac ccaccaggca aaaacattgg
661 ctctctgcta cgatcacatt acgaacgcat tatttacccc tatgaaatgt ttcagtctgg
721 agccaaccat gtgcaatgta acacacaccc gtttgacaat gaggtaaaag ataaggaata
781 caagccccac agcatccccc ttagacagtc tgtgcagcct tcaaagttca gcagctacag
841 tcgacgggca aaaaggctac agcctgatcc agagcctaca gaggaggaca ttgagaagca
901 tccagagcta aagaagttac agatatatgg gccaggtccc aaaatgatgg gcttgggcct
961 tatggctaag gataaggata agactgtgca taagaaagtc acatgccccc caactgttac
1021 ggtgaaggat gagcaaagtg gaggtgggaa cgtgtcatca acattgctca agcagcactt
1081 gagcctagag ccctgcacta agacaaccat gcaacttcga aagaatcaca gcagtgccca
1141 gtttattgac tcatatattt gccaagtatg ctcccgtggg gatgaagatg ataagcttct
1201 tttctgtgat ggctgtgatg acaattacca catcttctgc ttgttaccac cccttcctga
1261 aatccccaga ggcatctgga ggtgcccaaa atgtatcttg gcggagtgta aacagcctcc
1321 tgaagctttt ggatttgaac aggctaccca ggagtacagt ttgcagagtt ttggtgaaat
1381 ggctgattcc ttcaagtccg actacttcaa catgcctgta catatggtgc ctacagaact
1441 tgtagagaag gaattctgga ggctggtgag cagcattgag gaagacgtga cagttgaata
1501 tggagctgat attcattcca aagaatttgg cagtggcttt cctgtcagca atagcaaaca
1561 aaacttatct cctgaggaga aggagtatgc gaccagtggt tggaacctga atgtgatgcc
1621 agtgctagat cagtctgttc tctgtcacat caatgcagac atctcaggca tgaaggtgcc
1681 ctggctgtac gtgggcatgg ttttctcagc attttgttgg catattgagg atcactggag
1741 ttactctatt aactatctgc attggggtga gccgaagacc tggtatggtg taccctccct
1801 ggcagcagag catttggagg aggtgatgaa gatgctgaca cctgagctgt ttgatagcca
1861 gcctgatctc ctacaccagc ttgtcactct catgaatccc aacactttga tgtcccatgg
1921 tgtgccagtt gtccgcacaa accagtgtgc aggggagttt gtcatcactt ttcctcgtgc
1981 ttaccacagt ggttttaacc aaggctacaa ttttgctgaa gctgtcaact tttgtactgc
2041 tgactggcta cctgctggac gccagtgcat tgaacactac cgccggctcc ggcgctattg
2101 tgtcttctcc cacgaggagc tcatctgcaa gatggctgcc ttcccagaga cgttggatct
2161 caatctagca gtagctgtgc acaaggagat gttcattatg gttcaggagg agcgacgtct
2221 acgaaaggcc cttttggaga agggcgtcac ggaggctgag cgagaggctt ttgagctgct
2281 cccagatgat gaacgccagt gcatcaagtg caagaccacg tgcttcttgt cagccctggc
2341 ctgctacgac tgcccagatg gccttgtatg cctttcccac atcaatgacc tctgcaagtg
2401 ctctagtagc cgacagtacc tccggtatcg gtacaccttg gatgagctcc ccaccatgct
2461 gcataaactg aagattcggg ctgagtcttt tgacacctgg gccaacaaag tgcgagtggc
2521 cttggaggtg gaggatggcc gtaaacgcag ctttgaagag ctaagggcac tggagtctga
2581 ggctcgtgag aggaggtttc ctaatagtga gctgcttcag cgactgaaga actgcctgag
2641 tgaggtggag gcttgtattg ctcaagtcct ggggctggtc agtggtcagg tggccaggat
2701 ggacactcca cagctgacct tgactgaact ccgggtcctt cttgagcaga tgggcagcct
2761 gccctgtgcc atgcatcaga ttggggatgt caaggatgtc ctggaacagg tggaggccta
2821 tcaagctgag gctcgtgagg ctctggccac actgccctct agtccagggc tattgcggtc
2881 cctgttggag agggggcagc agctgggtgt agaggtgcct gaagcccatc agcttcagca
2941 gcaggtggag caggcgcaat ggctagatga agtgaagcag gccctggccc cttctgctca
3001 caggggctct ctggtcatca tgcaggggct tttggttatg ggtgccaaga tagcctccag
3061 cccttctgtg gacaaggccc gggctgagct gcaagaacta ctgaccattg cagagcgctg
3121 ggaagaaaag gctcatttct gcctggaggc caggcagaag catccaccag ccacattgga
3181 agccataatt cgtgagacag aaaacatccc tgttcacctg cctaacatcc aggctctcaa
3241 agaagctctg actaaggcac aagcttggat tgctgatgtg gatgagatcc aaaatggtga
3301 ccactacccc tgtctagatg acttggaggg cctggtggct gtgggccggg acctgcctgt
3361 ggggctggaa gagctgagac agctagagct gcaggtattg acagcacatt cctggagaga
3421 gaaggcctcc aagacctttc tcaagaagaa ttcttgctac acactgcttg aggtgctttg
3481 cccgtgtgca gacgctggct cagacagcac caagcgtagc cggtggatgg agaaggcgct
3541 ggggttgtac cagtgtgaca cagagctgct ggggctgtct gcacaggacc tcagagaccc
3601 aggctctgtg attgtggcct tcaaggaagg ggaacagaag gagaaggagg gtatcctgca
3661 gctgcgtcgc accaactcag ccaagcccag tccactggca ccatccctca tggcctcttc
3721 tccgacttct atctgtgtgt gtgggcaggt gccagctggg gtgggagttc tgcagtgtga
3781 cctgtgtcag gactggttcc atgggcagtg tgtgtcagtg ccccatctcc tcacctctcc
3841 aaagcccagt ctcacttcat ctccactgct agcctggtgg gaatgggaca caaaattcct
3901 gtgtccactg tgtatgcgct cacgacggcc acgcctagag acaatcctag ccttgctggt
3961 tgccctgcag aggctgcccg tgcggctgcc tgagggtgag gcccttcagt gtctcacaga
4021 gagggccatt ggctggcaag accgtgccag aaaggctctg gcctctgaag atgtgactgc
4081 tctgttgcga cagctggctg agcttcgcca acagctacag gccaaaccca gaccagagga
4141 ggcctcagtc tacacttcag ccactgcctg tgaccctatc agagaaggca gtggcaacaa
4201 tatttctaag gtccaagggc tgctggagaa tggagacagt gtgaccagtc ctgagaacat
4261 ggctccagga aagggctctg acctggagct actgtcctca ctgttgccgc agttgactgg
4321 ccctgtgttg gagctgcctg aggcaatccg ggctcccctg gaggagctca tgatggaagg
4381 ggacctgctt gaggtgaccc tggatgagaa ccacagcatc tggcagctgc tgcaggctgg
4441 acagcctcca gacctggaca gaattcgcac acttctggag ctggaaaaat ttgaacatca
4501 agggagtcgg acaaggagcc gggctctgga gaggcgacgg cggcggcaga aggtggatca
4561 gggtagaaac gttgagaatc ttgttcaaca ggagcttcag tcaaaaaggg ctcggagctc
4621 agggattatg tctcaggtgg gccgagaaga agaacattat caggagaaag cagaccgtga
4681 aaatatgttc ctgacacctt ccacagacca cagccctttc ttgaaaggaa accaaaatag
4741 cttacaacac aaggattcag gctcttcagc tgcttgtcct tctttaatgc ctttgctaca
4801 actctcctac tctgatgagc aacagttgtg acagtggcac caaaggtcat ttgtggttgt
4861 ttttgtttgt ttgtttctta aatcctacta tctcctggcc tggacctcag aaggagcttt
4921 ttgcttatct ataatttttc actgccaatt tttgatatcc tctctcctag agttactgtt
4981 aaaaggttgg ttcgtaaagt ccacaccccg atgct
//