LOCUS BC131784 2541 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens small nuclear ribonucleoprotein 200kDa (U5), mRNA
(cDNA clone IMAGE:40125532), complete cds.
ACCESSION BC131784
VERSION BC131784.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2541)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2541)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-JAN-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 31 Row: p Column: 15
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..2541
/db_xref="H-InvDB:HIT000390685"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:40125532"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_282"
/note="Vector: pCR-Blunt II-TOPO; Clone identification
sequence tag: TAAACTAA sequenced from the reverse primer"
gene 1..2541
/gene="SNRNP200"
/gene_synonym="BRR2"
/gene_synonym="HELIC2"
/gene_synonym="U5-200KD"
/db_xref="GeneID:23020"
/db_xref="HGNC:HGNC:30859"
/db_xref="MIM:601664"
CDS 288..2075
/gene="SNRNP200"
/gene_synonym="BRR2"
/gene_synonym="HELIC2"
/gene_synonym="U5-200KD"
/codon_start=1
/product="SNRNP200 protein"
/protein_id="AAI31785.1"
/db_xref="GeneID:23020"
/db_xref="HGNC:HGNC:30859"
/db_xref="MIM:601664"
/translation="MAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQ
RQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQV
VVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGR
CVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTF
LYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSKCISIEDEMDVAPLNLGM
IAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKV
PHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAIRLIQACVDVLSSN
GWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDE
ERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQLEREEEVTG
PVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATGAHNYTLY
FMSDAYMGCDQEYKFSVDVKEAETDSDSD"
BASE COUNT 612 a 666 c 687 g 576 t
ORIGIN
1 gtttgcagct tgcggtaggg aggcgtggtg gtctgaagcc tccgagcagc cgcggccatg
61 gcggatgtaa ccgcccgtag tctgcaatac gagtacaagg cgaactcgaa tcttgtgctc
121 caagctgacc gttctctcat tgaccggacc cgccgggatg aacccacagg agaggtgctg
181 tcccttgttg ggaagctgga gggcacccgt atgggagaca aggctcaacg gaccaaaccg
241 cagatgcagg aggaaagaag agccatacac aaacccgcct gctctccatg gccaagcctg
301 tgtaccatgc tatcaccaag cactcgccca agaagcctgt cattgtcttt gtgccgtctc
361 gcaagcagac ccgcctcact gccattgaca tcctcaccac ctgtgcagca gacatccaac
421 ggcagaggtt cttgcactgc accgagaagg atctgattcc gtacctggag aagctaagtg
481 acagcacgct caaggaaacg ctgctaaatg gggtgggcta cctgcatgag gggctcagcc
541 ccatggagcg acgcctggtg gagcagctct tcagctcagg ggctatccag gtggtggtgg
601 cttctcggag tctctgctgg ggcatgaacg tggctgccca cctggtaatc atcatggata
661 cccagtacta caatggcaag atccacgcct atgtggatta ccccatctat gacgtgcttc
721 agatggtggg ccacgccaac cgccctttgc aggacgatga ggggcgctgt gtcatcatgt
781 gtcagggctc caagaaggat ttcttcaaga agttcttata tgagccattg ccagtagaat
841 ctcacctgga ccactgtatg catgaccact tcaatgctga gatcgtcacc aagaccattg
901 agaacaagca ggatgctgtg gactacctca cctggacctt tctgtaccgc cgcatgacac
961 agaaccccaa ttactacaac ctgcagggca tctcccatcg tcacttgtcg gaccacttgt
1021 cagagctggt ggagcagacc ctgagtgacc tggagcagtc caagtgcatc agcatcgagg
1081 acgagatgga cgtggcgcct ctgaacctag gcatgatcgc cgcctactat tacatcaact
1141 acaccaccat tgagctcttc agcatgtccc tcaatgccaa gaccaaggtg cgagggctta
1201 tcgagatcat ctccaatgca gcagagtatg agaacattcc catccggcac catgaagaca
1261 atctcctgag gcagttggct cagaaggtcc cccacaagct gaataaccct aagttcaatg
1321 atccgcacgt caagaccaac ctgctcctgc aggctcactt gtctcgcatg cagctgagtg
1381 ctgagttgca gtcagatacg gaggaaatcc ttagtaaggc aatccggctc atccaggcct
1441 gcgtggatgt cctttccagc aatgggtggc tcagccctgc tctggcagct atggaactgg
1501 cccagatggt cacccaagcc atgtggtcca aggactcata cctgaagcag ctgccacact
1561 tcacctctga gcatatcaaa cgttgcacag acaagggagt ggagagtgtt ttcgacatca
1621 tggagatgga ggatgaagaa cggaacgcgt tgcttcagct gactgacagc cagattgcag
1681 atgtggctcg cttttgtaac cgctacccta atatcgaact atcttatgag gtggtagata
1741 aggacagcat ccgcagtggc gggccagttg tggtgctggt gcagctggag cgagaggagg
1801 aagtcacagg ccctgtcatt gcgcctctct tcccgcagaa acgtgaagag ggctggtggg
1861 tggtgattgg agatgccaag tccaatagcc tcatctccat caagaggctg accttgcagc
1921 agaaggccaa ggtgaagttg gactttgtgg ccccagccac tggtgcccac aactacactc
1981 tgtacttcat gagtgacgct tacatgggat gtgaccagga gtacaaattc agcgtggatg
2041 tgaaagaagc tgagacagac agtgattcag attgagtcct gaggcattta cttttgggta
2101 aaggagagtt gagcctgaat taggaatgtg tacattgtag gaatcctggt tgtggggacc
2161 aggtctgtgg gcctcaggtc tggccagcca gggctggtgc tgtccccgcc tacctccact
2221 tcctttccct tgctcactct ggatccagtg acagcaggtg tcatgggtca agcataaatc
2281 atatatagca ttttcaggca tgttcctggt agttcttttg agtctgacat tctaataaaa
2341 taatttgtag aaaccatttg tctttgtagt gattccaaat taaaagtttt ctttctccaa
2401 cctgagggca cggccaaaaa gatctggtta ttttttagcc aggaacgtgc ttgttaatga
2461 gtatgtctgg aggacagacc tgctcattag gtgtgctgtc ccctgtagcc tcgtgagtca
2521 gcccagagga gggtacatgc g
//