LOCUS BC131624 2119 bp mRNA linear HUM 30-JAN-2007
DEFINITION Homo sapiens pogo transposable element with KRAB domain, mRNA (cDNA
clone MGC:149714 IMAGE:40117695), complete cds.
ACCESSION BC131624
VERSION BC131624.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2119)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2119)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-JAN-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 31 Row: j Column: 3.
FEATURES Location/Qualifiers
source 1..2119
/db_xref="H-InvDB:HIT000390586"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:149714 IMAGE:40117695"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_282"
/note="Vector: pCR-Blunt II-TOPO; Clone identification
sequence tag: AATATAAA sequenced from the reverse primer"
gene 1..2119
/gene="POGK"
/gene_synonym="BASS2"
/gene_synonym="LST003"
/db_xref="GeneID:57645"
/db_xref="HGNC:HGNC:18800"
CDS 89..1918
/gene="POGK"
/gene_synonym="BASS2"
/gene_synonym="LST003"
/codon_start=1
/product="pogo transposable element with KRAB domain"
/protein_id="AAI31625.1"
/db_xref="GeneID:57645"
/db_xref="HGNC:HGNC:18800"
/translation="MESTAYPLNLSLKEEEEEEEIQSRELEDGPADMQKVRICSEGGW
VPALFDEVAIYFSDEEWEVLTEQQKALYREVMRMNYETVLSLEFPFPKPDMITRLEGE
EESQNSDEWQLQGGTSAENEESDVKPPDWPNPMNATSQFPQPQHFDSFGLRLPRDITE
LPEWSEGYPFYMAMGFPGYDLSADDIAGKFQFSRGMRRSYDAGFKLMVVEYAESTNNC
QAAKQFGVLEKNVRDWRKVKPQLQNAHAMRRAFRGPKNGRFALVDQRVAEYVRYMQAK
GDPITREAMQLKALEIAQEMNIPEKGFKASLGWCRRMMRRYDLSLRHKVPVPQHLPED
LTEKLVTYQRSVLALRRAHDYEVAQMGNADETPICLEVPSRVTVDNQGEKPVLVKTPG
REKLKITAMLGVLADGRKLPPYIILRGTYIPPGKFPSGMEIRCHRYGWMTEDLMQDWL
EVVWRRRTGAVPKQRGMLILNGFRGHATDSVKNSMESMNTDMVIIPGGLTSQLQVLDV
VVYKPLNDSVRAQYSNWLLAGNLALSPTGNAKKPPLGLFLEWVMVAWNSISSESIVQG
FKKCHISSNLEEEDDVLWEIESELPGGGEPPKDCDTESMAESN"
BASE COUNT 553 a 522 c 641 g 403 t
ORIGIN
1 gacggagagg cggaaaggat ggcgctgtga cagccgggcc ggagccctcg cgtccccacc
61 ccgcgccctg gccgctgggc ccggcgagat ggagtccaca gcctaccctc tcaatttgag
121 cctgaaagaa gaggaagagg aagaagagat tcagagccgg gaactagagg acggcccggc
181 agacatgcag aaagtacgaa tctgctctga gggcggatgg gtaccggccc tatttgatga
241 ggtggccata tatttttccg atgaggaatg ggaagttttg acggagcaac aaaaggccct
301 ctaccgggaa gtcatgagga tgaattatga aactgtcctg tccctggaat tcccattccc
361 taagccagac atgatcaccc gtttggaagg ggaggaggag tctcagaatt ctgacgagtg
421 gcagctccaa ggaggcacct ctgcagaaaa tgaagaatct gacgtaaagc ctccagactg
481 gccaaaccca atgaatgcta cctcccagtt tcctcagcct cagcactttg acagctttgg
541 cctccgtctg cctcgggata tcacagagct gcccgagtgg agtgaggggt accccttcta
601 catggccatg ggcttcccag ggtatgacct ctcggctgat gacatagctg ggaagtttca
661 gttcagccgg ggcatgcgcc gcagttacga cgcagggttc aagctgatgg tagtggaata
721 tgctgagagt accaacaact gccaggctgc caagcagttt ggagtattgg aaaaaaacgt
781 tcgagactgg cgcaaagtga agccacagct tcaaaacgcc cacgccatgc ggcgggcatt
841 ccgaggcccc aagaatggga ggtttgctct ggtggaccag cgtgtggccg aatatgtcag
901 atacatgcag gccaaagggg accccatcac ccgggaggcg atgcagctga aagctctcga
961 aatcgcccag gaaatgaaca ttccagagaa agggttcaag gcaagcttgg gttggtgtcg
1021 aagaatgatg agaaggtatg acctgtctct gaggcataaa gtgcccgtgc cccagcacct
1081 gccggaagac ctgactgaga aactcgtcac ttaccagcgc agtgtcctgg ctctgcgcag
1141 ggcgcatgac tatgaggtag ctcagatggg gaatgcagat gagacgccca tttgtttaga
1201 ggtgccatca cgggtaactg ttgataacca gggcgaaaag cctgtcttgg tcaagacacc
1261 aggcagggaa aaactgaaaa tcacagcaat gcttggtgtc ttggctgatg ggaggaagtt
1321 accaccgtac atcattttga ggggaacata tatccccccg gggaagtttc ccagtgggat
1381 ggaaattcgc tgccaccggt atgggtggat gactgaagac ttgatgcagg actggttgga
1441 agtggtgtgg agacggagga caggagcagt gcccaagcag cgagggatgc tgatcttgaa
1501 tggcttccgg ggccatgcca cagattccgt gaagaactcc atggaaagca tgaacactga
1561 catggtgatc atcccagggg gtctgacctc acagcttcag gtgctggatg tcgtggtcta
1621 caagccactg aatgacagtg tgcgggccca gtactccaac tggcttctgg ctgggaacct
1681 ggcgctgagc ccaaccggga atgctaagaa gccacccctg ggcctctttc tggagtgggt
1741 catggtcgcg tggaatagca tctcaagtga gtccatcgtc caagggttca agaagtgcca
1801 tatctccagc aacttggagg aggaagacga tgtcctgtgg gaaatcgaga gtgagttgcc
1861 aggaggagga gaaccaccaa aagattgtga caccgaaagc atggctgaga gcaactgaag
1921 ggaaagggaa agcaaatgga actctgattt aaacagctgg ggatgaaatt cctcaagatg
1981 attattcctg aaagtgtgga tgcgctggat gcgcagggaa catcaggaaa aggccacggg
2041 gctctgaaca gccccggtcc agacagcagc ctgtacatcc atcccaggac acagcccagc
2101 ccctccccac accatacaa
//