LOCUS BC130623 2241 bp mRNA linear HUM 04-AUG-2008
DEFINITION Homo sapiens collagen, type X, alpha 1, mRNA (cDNA clone MGC:163495
IMAGE:40146654), complete cds.
ACCESSION BC130623
VERSION BC130623.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2241)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2241)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (04-JAN-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 8 Row: O Column: 14.
FEATURES Location/Qualifiers
source 1..2241
/db_xref="H-InvDB:HIT000390413"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:163495 IMAGE:40146654"
/tissue_type="Pooled, cerebellum, kidney, placenta,
testis, lung, colon, liver, heart, thyroid, bladder,
uterus, PCR rescued clones"
/clone_lib="NIH_MGC_362"
/lab_host="DH10B"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: AAAACCTT"
gene 1..2241
/gene="COL10A1"
/db_xref="GeneID:1300"
/db_xref="HGNC:HGNC:2185"
/db_xref="MIM:120110"
CDS 27..2069
/gene="COL10A1"
/codon_start=1
/product="collagen, type X, alpha 1"
/protein_id="AAI30624.1"
/db_xref="GeneID:1300"
/db_xref="HGNC:HGNC:2185"
/db_xref="MIM:120110"
/translation="MLPQIPFLLLVSLNLVHGVFYAERYQMPTGIKGPLPNTKTQFFI
PYTIKSKGIAVRGEQGTPGPPGPAGPRGHPGPSGPPGKPGYGSPGLQGEPGLPGPPGP
SAVGKPGVPGLPGKPGERGPYGPKGDVGPAGLPGPRGPPGPPGIPGPAGISVPGKPGQ
QGPTGAPGPRGFPGEKGAPGVPGMNGQKGEMGYGAPGRPGERGLPGPQGPTGPSGPPG
VGKRGENGVPGQPGIKGDRGFPGEMGPIGPPGPQGPPGERGPEGIGKPGAAGAPGQPG
IPGTKGLPGAPGIAGPPGPPGFGKPGLPGLKGERGPAGLPGGPGAKGEQGPAGLPGKP
GLTGPPGNMGPQGPKGIPGSHGLPGPKGETGPAGPAGYPGAKGERGSPGSDGKPGYPG
KPGLDGPKGNPGLPGPKGDPGVGGPPGLPGPVGPAGAKGMPGHNGEAGPRGAPGIPGT
RGPIGPPGIPGFPGSKGDPGSPGPPGPAGIATKGLNGPTGPPGPPGPRGHSGEPGLPG
PPGPPGPPGQAVMPEGFIKAGQRPSLSGTPLVSANQGVTGMPVSAFTVILSKAYPAIG
TPIPFDKILYNRQQHYDPRTGIFTCQIPGIYYFSYHVHVKGTHVWVGLYKNGTPVMYT
YDEYTKGYLDQASGSAIIDLTENDQVWLQLPNAESNGLYSSEYVHSSFSGFLVAPM"
BASE COUNT 589 a 608 c 622 g 422 t
ORIGIN
1 ccagcacgca gaatccatct gagaatatgc tgccacaaat accctttttg ctgctagtat
61 ccttgaactt ggttcatgga gtgttttacg ctgaacgata ccaaatgccc acaggcataa
121 aaggcccact acccaacacc aagacacagt tcttcattcc ctacaccata aagagtaaag
181 gtatagcagt aagaggagag caaggtactc ctggtccacc aggccctgct ggacctcgag
241 ggcacccagg tccttctgga ccaccaggaa aaccaggcta cggaagtcct ggactccaag
301 gagagccagg gttgccagga ccaccgggac catcagctgt agggaaacca ggtgtgccag
361 gactcccagg aaaaccagga gagagaggac catatggacc aaaaggagat gttggaccag
421 ctggcctacc aggaccccgg ggcccaccag gaccacctgg aatccctgga ccggctggaa
481 tttctgtgcc aggaaaacct ggacaacagg gacccacagg agccccagga cccaggggct
541 ttcctggaga aaagggtgca ccaggagtcc ctggtatgaa tggacagaaa ggggaaatgg
601 gatatggtgc tcctggtcgt ccaggtgaga ggggtcttcc aggccctcag ggtcccacag
661 gaccatctgg ccctcctgga gtgggaaaaa gaggtgaaaa tggggttcca ggacagccag
721 gcatcaaagg tgatagaggt tttccgggag aaatgggacc aattggccca ccaggtcccc
781 aaggccctcc tggggaacga gggccagaag gcattggaaa gccaggagct gctggagccc
841 caggccagcc agggattcca ggaacaaaag gtctccctgg ggctccagga atagctgggc
901 ccccagggcc tcctggcttt gggaaaccag gcttgccagg cctgaaggga gaaagaggac
961 ctgctggcct tcctgggggt ccaggtgcca aaggggaaca agggccagca ggtcttcctg
1021 ggaagccagg tctgactgga ccccctggga atatgggacc ccaaggacca aaaggcatcc
1081 cgggtagcca tggtctccca ggccctaaag gtgagacagg gccagctggg cctgcaggat
1141 accctggggc taagggtgaa aggggttccc ctgggtcaga tggaaaacca gggtacccag
1201 gaaaaccagg tctcgatggt cctaagggta acccagggtt accaggtcca aaaggtgatc
1261 ctggagttgg aggacctcct ggtctcccag gccctgtggg cccagcagga gcaaagggaa
1321 tgcccggaca caatggagag gctggcccaa gaggtgcccc tggaatacca ggtactagag
1381 gccctattgg gccaccaggc attccaggat tccctgggtc taaaggggat ccaggaagtc
1441 ccggtcctcc tggcccagct ggcatagcaa ctaagggcct caatggaccc accgggccac
1501 cagggcctcc aggtccaaga ggccactctg gagagcctgg tcttccaggg ccccctgggc
1561 ctccaggccc accaggtcaa gcagtcatgc ctgagggttt tataaaggca ggccaaaggc
1621 ccagtctttc tgggacccct cttgttagtg ccaaccaggg ggtaacagga atgcctgtgt
1681 ctgcttttac tgttattctc tccaaagctt acccagcaat aggaactccc ataccatttg
1741 ataaaatttt gtataacagg caacagcatt atgacccaag gactggaatc tttacttgtc
1801 agataccagg aatatactat ttttcatacc acgtgcatgt gaaagggact catgtttggg
1861 taggcctgta taagaatggc acccctgtaa tgtacaccta tgatgaatac accaaaggct
1921 acctggatca ggcttcaggg agtgccatca tcgatctcac agaaaatgac caggtgtggc
1981 tccagcttcc caatgccgag tcaaatggcc tatactcctc tgagtatgtc cactcctctt
2041 tctcaggatt cctagtggct ccaatgtgag tacaccccac agagctaatc taaatcttgt
2101 gctagaaaaa gcattctcta actctacccc accctacaaa atgcatatgg aggtaggctg
2161 aaaagaatgt aatttttatt ttctgaaata cagatttgag ctatcagacc aacaaacctt
2221 ccccctgaaa agtgagcagc a
//