LOCUS BC130584 6027 bp mRNA linear HUM 04-JAN-2007
DEFINITION Homo sapiens LIM domain containing preferred translocation partner
in lipoma, mRNA (cDNA clone MGC:163456 IMAGE:40146615), complete
cds.
ACCESSION BC130584
VERSION BC130584.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 6027)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 6027)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (04-JAN-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 8 Row: M Column: 23.
FEATURES Location/Qualifiers
source 1..6027
/db_xref="H-InvDB:HIT000390374"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:163456 IMAGE:40146615"
/tissue_type="Pooled, cerebellum, kidney, placenta,
testis, lung, colon, liver, heart, thyroid, bladder,
uterus, PCR rescued clones"
/clone_lib="NIH_MGC_364"
/lab_host="DH10B"
/note="Vector: pCR-XL-TOPO with reversed insert; Clone
identification sequence tag: AGAGCGAA"
gene 1..6027
/gene="LPP"
/db_xref="GeneID:4026"
/db_xref="HGNC:HGNC:6679"
/db_xref="MIM:600700"
CDS 49..1887
/gene="LPP"
/codon_start=1
/product="LIM domain containing preferred translocation
partner in lipoma"
/protein_id="AAI30585.1"
/db_xref="GeneID:4026"
/db_xref="HGNC:HGNC:6679"
/db_xref="MIM:600700"
/translation="MSHPSWLPPKSTGEPLGHVPARMETTHSFGNPSISVSTQQPPKK
FAPVVAPKPKYNPYKQPGGEGDFLPPPPPPLDDSSALPSISGNFPPPPPLDEEAFKVQ
GNPGGKTLEERRSSLDAEIDSLTSILADLECSSPYKPRPPQSSTGSTASPPVSTPVTG
HKRMVIPNQPPLTATKKSTLKPQPAPQAGPIPVAPIGTLKPQPQPVPASYTTASTSSR
PTFNVQVKSAQPSPHYMAAPSSGQIYGSGPQGYNTQPVPVSGQCPPPSTRGGMDYAYI
PPPGLQPEPGYGYAPNQGRYYEGYYAAGPGYGGRNDSDPTYGQQGHPNTWKREPGYTP
PGAGNQNPPGMYPVTGPKKTYITDPVSAPCAPPLQPKGGHSGQLGPSSVAPSFRPEDE
LEHLTKKMLYDMENPPADEYFGRCARCGENVVGEGTGCTAMDQVFHVDCFTCIICNNK
LRGQPFYAVEKKAYCEPCYINTLEQCNVCSKPIMERILRATGKAYHPHCFTCVMCHRS
LDGIPFTVDAGGLIHCIEDFHKKFAPRCSVCKEPIMPAPGQEETVRIVALDRDFHVHC
YRCEDCGGLLSEGDNQGCYPLDGHILCKTCNSARIRVLTAKASTDL"
BASE COUNT 1755 a 1312 c 1142 g 1818 t
ORIGIN
1 ctggacgctc atcagaggga agatcttttt cctcaattga ttccaacaat gtctcaccca
61 tcttggctgc cacccaaaag cactggtgag cccctcggcc atgtgcctgc acggatggag
121 accacccatt cctttgggaa ccccagcatt tcagtgtcta cacaacagcc acccaaaaag
181 tttgccccgg tagttgctcc aaaacctaag tacaacccat acaaacaacc tggaggtgag
241 ggtgattttc ttccaccccc acctccacct ctagatgatt ccagtgccct tccatctatc
301 tctggaaact ttcctcctcc accacctctt gatgaagagg ctttcaaagt acaggggaat
361 cccggaggca agacacttga ggagaggcgc tccagcctgg acgctgagat tgactccttg
421 accagcatct tggctgacct tgagtgcagc tccccctata agcctcggcc tccacagagc
481 tccactggtt caacagcctc tcctccagtt tcgaccccag tcacaggaca caagagaatg
541 gtcatcccga accaaccccc tctaacagca accaagaagt ctacattgaa accacagcct
601 gcaccccagg ctggacccat ccctgtggct ccaatcggaa cactcaaacc ccagcctcag
661 ccagtcccag cctcctacac cacggcctcc acttcttcaa ggcctacctt taatgtgcag
721 gtgaagtcag cccagcccag ccctcattat atggctgccc cttcatcagg acaaatttat
781 ggctcagggc cccagggcta taacactcag ccagttcctg tctctgggca gtgtccacct
841 ccttcaacac ggggaggcat ggattatgcc tacattccac caccaggact tcagccggag
901 cctgggtatg ggtatgcccc caaccaggga cgctattatg aaggctacta tgcagcaggg
961 ccaggctatg ggggcagaaa tgactctgat cctacctatg gtcaacaagg tcacccaaat
1021 acctggaaac gggaaccagg gtacactcct cctggagcag ggaaccagaa ccctcctggg
1081 atgtatccag tcactggtcc caagaagacc tatatcacag atcctgtttc agccccctgt
1141 gcgccaccat tgcagccaaa gggtggccat tcagggcaac tggggccttc gtcagttgcc
1201 ccttcattcc gcccagagga tgagcttgag cacctgacca aaaagatgct gtatgacatg
1261 gaaaatccac ctgctgacga atactttggc cgctgtgctc gctgtggaga aaacgtagtt
1321 ggggaaggta caggatgcac tgccatggat caggtcttcc acgtggattg ttttacctgc
1381 atcatctgca acaacaagct ccgagggcag ccattctatg ctgtggaaaa gaaagcatac
1441 tgcgagccct gctacattaa tactctggag cagtgcaatg tgtgttccaa gcccatcatg
1501 gagcggattc tccgagccac cgggaaggcc tatcatcctc actgtttcac ctgcgtgatg
1561 tgccaccgca gcctggatgg gatcccattc actgtggatg ctggcgggct cattcactgc
1621 attgaggact tccacaagaa atttgccccg cggtgttctg tgtgcaagga gcctattatg
1681 ccagccccgg gccaggagga gactgtccgt attgtggctt tggatcgaga tttccatgtt
1741 cactgctacc gatgcgagga ttgcggtggt ctcctgtctg aaggagataa ccaaggctgc
1801 taccccttgg atgggcacat cctctgcaag acctgcaact ctgcccgcat cagggtgttg
1861 accgccaagg cgagcactga cctttagatt cagtcacctg ttcagccggc actgagaaga
1921 acgaacacaa gaaaaagata agaaatacta gagtaaaggc catcaaacta cgcgatagtc
1981 tctgttcttc atctgctatt aaccttgcct tagaaacaca taaattatga gatttttttt
2041 aaaagttgtt accaaataca catttcacat tgaatcatgt aggatcttga tgggcctttg
2101 ttcccaagga cttccacatt tttgcacaga ttatgctcca tcccattcac ttctgcattc
2161 ctgtaacttt taatccctat gtttgtctca cttttcatct ggttgaatgg cttttcttag
2221 tgtggtattt gctgtcacat agtttttcct gggtgagtct gccaactcac aggtgctttt
2281 aggcttgaaa tctccatcct atcatttccg ttttgcctgt gactgtaaag agtagccatt
2341 cttttcccat gtattgaaga ggatattctt ctcttgcttt atactactca cgtccttggg
2401 gagggaaatg cacaattttt ttttgttagg ctgtaaagaa tttaagctgt aaattacata
2461 agttagaaca agcccaaatt taatttgcaa ccatcagaat tcagaatcta tagtgaccag
2521 tgatcaaggc taattggaaa agagttatcg gcccatagct aataagtagt gacagacaac
2581 caagcttcaa tatttttcta aagaaattac aggtgggata tgctagaaaa ggcattttgg
2641 ggttatgttt aaaaaaacat tattgtccca caatattacc ttaagatttt tcttttccgc
2701 actacctgaa cattgtaata cagacaaact tgatttcttc tagaagataa cattttcaat
2761 actgtcccac ttctcatctt aaaaatattg tcatgtttat tctaatatcc aacacaacta
2821 tcaaaattgc ctttttctct agaggatgaa ggctgtgaaa aaaccgttca aattctcttc
2881 tttttctttt ttattaccag gtccattttg cctgacaatt gcaaatcaga gcatacaaaa
2941 taaaactgtg cagttttgtt tggtttactt tcaaaagagt agaaagcttg aaaagattct
3001 gaaaccacag tttcattatt ctcataatcc ttctgcaact gaaattacat attgcaggag
3061 acattttcat atcatcaatg tgacatttac accacacttt caaagacaat cactgaaaca
3121 aaaattgtct ttatgagcta aaaatatgca gaatctctgc ctagaatctt tattcaaact
3181 tttattagcc agtgaaacac ttgcttgcca actgccaagc catacttatt aagttcgaac
3241 atgtttcact taaggagaga cacctagctt agtcatggca agttgccatt ttgtaaacta
3301 aggattttgg actgagattt cttaaatctt tcttcaaatc tcccacaagt atatactttt
3361 aaattatgga gtattttaag tctacaaaaa ggtataaata ataatataat gaattcctat
3421 atacctaata cccagtttaa gacaccaaat ataacaagta taattacatc ctccaatgta
3481 ccgtttcctt attccacaga tatctttttc attattgtga agtgatgttc agatttctag
3541 ttttttttct agtttttaat tttaacatca gaactgaaat aaaaaattat ggatacgtgt
3601 tttgaattgc aaactattcc tcaggaattc caattaaatt tattttactt gaataggaat
3661 gatcataaaa gtgattcttt ttttgtgact agaaattctt aagccgatgg tcactatagc
3721 tcatccttaa tgtatggctc atttgctttt gtcactaaac ggttttgtgt tagaaccacc
3781 aaaattatag cttttaagag cttcctttga ccactgtctt tttcttaccc tacttctctt
3841 atctttgatc gtatatttct cataatgtga aatatgatga gattcactta ggggcagcat
3901 gttagttttg ggaggcaatg tcaactgtgt ctctgaattc ctgtcttcca aattgaagcc
3961 agaccatgct gatgacctca agtagcactg actatttgac aatagggctg ataatgtaat
4021 cggcttgaat tttgacttag taacttttta tgtaatactt tcggagaaat tctctttagg
4081 acaaagcaga gagtccaatt tattgaggga tagattgtat ctcttaaagt ggtcatatta
4141 ttattaattt tgccaaaaga agaagaattt attgaatatt tatactataa aatgcagtaa
4201 cattctactt gcttattaca tttaaatcct tgtgtaactg aatgtttaca tgtcaagagg
4261 aaaagctgta agaaaatgct gtcacagacc catccctgtg gcatcgtcag cagaatactg
4321 cttgcttaca atctttatta tgcattctta taacataacc tcagagtatc tttaccaaag
4381 gtttttaaag taaatctctt tttaagatag acttattctt ttataataat gaatgtgcac
4441 tcatacatat gtagaaacat ttagatttag agtttttttt tttctttcac aaggtataat
4501 aaggaaagga tcctacaata ttttattcta gggtttctta aatatatgat ttatattact
4561 gtcttttcta ttaatcattt gatttaaaca atgccaagtc actctttttt agttgcatga
4621 aattttgcct gcaacagaga gaaaaagatt gtattacttt aatgattata atcatactgt
4681 ctgctgatat aatatcataa ttgttgtggt ttaaatacat aaatagtaga aaaatcagag
4741 tctataacag aaagtttgta aaaatatact gattttgaaa agtatcagga atataaatat
4801 ttggtaattc tgtgtaacaa gagagacatg gaaaaggaaa aaaatccact atatcatggg
4861 ctctgcagaa catatcaaaa taggatttct taaatttttc aacccccaga ccatactgac
4921 tcaacatgga gtctcactgg ccaagaaaat tgcctttaaa actcgaaaat aaggccaggt
4981 gtggtgactc acacttgtaa tcccagcaat ttgggaggct gagacaggag gattgcctga
5041 ggccaggagt ttgacaccag cctgggcaac atagtgagac cttgtctcta caaaaaataa
5101 aataaaataa aaaccaaatt agccagacat ggtggcatgc gcttgtttaa aaaaacaaat
5161 aaataaataa tcgactcaaa aataagtcat gtgtcccagc ataaggcatc aggttgttag
5221 atgctggcat ctctgcagct caaagatgtg ggttcttttt cttgtcatta acacattgtt
5281 atttctgtag gaccaacttc tctgatcaaa attacttttc tgggtatgtg ctgattaagg
5341 gggtggactt atcaacacta taattgttcc ctatgaaaga ttccacagag atgtttatgg
5401 tgaggtttaa aggatatgaa actctacatt taaacaagta ttttatattt gggtacagag
5461 gaagaaagag agggcttttt ccatggggct atagtagaga gttagtggaa tatagacagg
5521 actctgaaaa cacaacttcc agccattttt ttagttagta aaaatcctat taatgtgaac
5581 cagccaggaa taacagtgtt atttctattg gatatggttt gggcttctct tgtcaaatct
5641 gtgtcggctg ccccctgatc cttccattat caagttttga agggtgttgg ggaaattatg
5701 gcagctgcta gggagatcag ggaaacactg atgtaacctc aaagcctctc accattcctc
5761 ttggcttgga aaggctttat tttttcatat acatttctag aaatattgct attctacctt
5821 agtatttcac atttgtagtt caaacaagcg attgtccatc tgttgcctag agctatagta
5881 catgtgtgtt atgaatgaaa tatgacagca tgttccatac ccctgcttta gccatctgtg
5941 ggaaaccagc aaactgaaaa agacacctct gcaaaatgtg cctcaagtcc atttcttggg
6001 atcgctcgtt tggtgcactc tcgtggg
//