LOCUS BC130418 5151 bp mRNA linear HUM 04-JAN-2007
DEFINITION Homo sapiens AT rich interactive domain 4B (RBP1-like), mRNA (cDNA
clone MGC:163290 IMAGE:40146449), complete cds.
ACCESSION BC130418
VERSION BC130418.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5151)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 5151)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (04-JAN-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 8 Row: G Column: 1.
FEATURES Location/Qualifiers
source 1..5151
/db_xref="H-InvDB:HIT000390208"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:163290 IMAGE:40146449"
/tissue_type="Cerebellum, Lung, PCR rescued clones"
/clone_lib="NIH_MGC_348"
/lab_host="DH10B"
/note="Vector: pCR-XL-TOPO with reversed insert; Clone
identification sequence tag: TCTATGCC"
gene 1..5151
/gene="ARID4B"
/gene_synonym="BCAA"
/gene_synonym="BRCAA1"
/gene_synonym="RBBP1L1"
/gene_synonym="SAP180"
/db_xref="GeneID:51742"
/db_xref="HGNC:HGNC:15550"
/db_xref="MIM:609696"
CDS 416..3877
/gene="ARID4B"
/gene_synonym="BCAA"
/gene_synonym="BRCAA1"
/gene_synonym="RBBP1L1"
/gene_synonym="SAP180"
/codon_start=1
/product="ARID4B protein"
/protein_id="AAI30419.1"
/db_xref="GeneID:51742"
/db_xref="HGNC:HGNC:15550"
/db_xref="MIM:609696"
/translation="MKALDEPPYLTVGTDVSAKYRGAFCEAKIKTAKRLVKVKVTFRH
DSSTVEVQDDHIKGPLKVGAIVEVKNLDGAYQEAVINKLTDASWYTVVFDDGDEKTLR
RSSLCLKGERHFAESETLDQLPLTNPEHFGTPVIGKKTNRGRRSNHIPEEESSSSSSD
EDEDDRKQIDELLGKVVCVDYISLDKKKALWFPALVVCPDCSDEIAVKKDNILVRSFK
DGKFTSVPRKDVHEITSDTAPKPDAVLKQAFEQALEFHKSRTIPANWKTELKEDSSSS
EAEEEEEEEDDEKEKEDNSSEEEEEIEPFPEERENFLQQLYKFMEDRGTPINKRPVLG
YRNLNLFKLFRLVHKLGGFDNIESGAVWKQVYQDLGIPVLNSAAGYNVKCAYKKYLYG
FEEYCRSANIEFQMALPEKVVNKQCKECENVKEIKVKEENETEIKEIKMEEERNIIPR
EEKPIEDEIERKENIKPSLGSKKNLLESIPTHSDQEKEVNIKKPEDNENLDDKDDDTT
RVDESLNIKVEAEEEKAKSGDETNKEEDEDDEEAEEEEEEEEEEEDEDDDDNNEEEEF
ECYPPGMKVQVRYGRGKNQKMYEASIKDSDVEGGEVLYLVHYCGWNVRYDEWIKADKI
VRPADKNVPKIKHRKKIKNKLDKEKDKDEKYSPKNCKLRRLSKPPFQTNPSPEMVSKL
DLTDAKNSDTAHIKSIEITSILNGLQASESSAEDSEQEDERGAQDMDNNGKEESKIDH
LTNNRNDLISKEEQNSSSLLEENKVHADLVISKPVSKSPERLRKDIEVLSEDTDYEED
EVTKKRKDVKKDTTDKSSKPQIKRGKRRYCNTEECLKTGSPGKKEEKAKNKESLCMEN
SSNSSSDEDEEETKAKMTPTKKYNGLEEKRKSLRTTGFYSGFSEVAEKRIKLLNNSDE
RLQNSRAKDRKDVWSSIQGQWPKKTLKELFSDSDTEAAASPPHPAPEEGVAEESLQTV
AEEESCSPSVELEKPPPVNVDSKPIEEKTVEVNDRKAEFPSSGSNSVLNTPPTTPESP
SSVTVTEGSRQQSSVTVSEPLAPNQEEVRSIKSETDSTIEVDSVAGELQDLQSEGNSS
PAGFDASVSSSSSNQPEPEHPEKACTGQKRVKDAQGGGSSSKKQKRSHKATVVNNKKK
GKGSAPH"
BASE COUNT 1806 a 943 c 1208 g 1194 t
ORIGIN
1 gcggagggag actcttgagc ttcatcttgc cgccgccacg gccaccgcct ggacctttgc
61 ccggagggag ctgcagaggg tccatcgccg ccgtcctctg gagggcagcg cgattggggg
121 cccggacctc cagtccgggg gggatttttc gtcgtccccc tccccccaac cagggagccc
181 gagcggccgc caaacaaagg taccagtcgc cgccgcggga ggaggaggag ccggagcctc
241 tgcctcagca gccgctggac ccgccgccct tcttccccat ctctcccccg ggcctgctgg
301 ttttgggggg gagaaggaga gaggggactc tggacgtgcc agggtcagat ctcgcctccg
361 aggaaggtgc agctgaacct ggtgttttag aggatacctt ggtcccagag tcatcatgaa
421 ggcccttgat gagcctccct atttgacagt gggcactgat gtgagtgcta aatacagagg
481 agccttttgt gaagccaaga tcaagacagc aaaaagactt gtcaaagtca aggtgacatt
541 tagacatgat tcttcaacag tggaagttca ggatgaccac ataaagggcc cactaaaggt
601 aggagctatt gtggaagtga agaatcttga tggtgcatat caggaagctg ttatcaataa
661 actaacagat gcgagttggt acactgtagt ttttgatgac ggagatgaga agacactgag
721 acgatcttca ctgtgcctga aaggagagag gcattttgct gaaagtgaaa cattagacca
781 gctcccactc accaaccctg agcattttgg cactccagtc ataggaaaga aaacaaatag
841 aggaagaaga tctaatcata taccagagga agagtcttca tcatcctcca gtgatgaaga
901 tgaggatgat aggaaacaga ttgatgagct actaggcaaa gttgtatgtg tagattacat
961 tagtttggat aaaaagaaag cactgtggtt tcctgcattg gtggtttgtc ctgattgtag
1021 tgatgagatt gctgtaaaaa aggacaatat tcttgttcga tctttcaaag atggaaaatt
1081 tacttcagtt ccaagaaaag atgtccatga aattactagt gacactgcac caaagcctga
1141 tgctgtttta aagcaagcct ttgaacaggc acttgaattt cacaaaagta gaactattcc
1201 tgctaactgg aagactgaat tgaaagaaga tagctctagc agtgaagcag aggaagaaga
1261 ggaggaggaa gatgatgaaa aagaaaagga ggataatagc agtgaagaag aggaagaaat
1321 agaaccattt ccagaagaaa gggagaactt tcttcagcaa ttgtacaaat ttatggaaga
1381 tagaggtaca cctattaaca aacgacctgt acttggatat cgaaatttga atctctttaa
1441 gttattcaga cttgtacaca aacttggagg atttgataat attgaaagtg gagctgtttg
1501 gaaacaagtc taccaagatc ttggaatccc tgtcttaaat tcagctgcag gatacaatgt
1561 taaatgtgct tataaaaaat acttatatgg ttttgaggag tactgtagat cagccaacat
1621 tgaatttcag atggcattgc cagagaaagt tgttaacaag caatgtaagg agtgtgaaaa
1681 tgtaaaagaa ataaaagtta aggaggaaaa tgaaacagag atcaaagaaa taaagatgga
1741 ggaggagagg aatataatac caagagaaga aaagcctatt gaggatgaaa ttgaaagaaa
1801 agaaaatatt aagccctctc tgggaagtaa aaagaattta ttagaatcta tacctacaca
1861 ttctgatcag gaaaaagaag ttaacattaa aaaaccagaa gacaatgaaa atctggacga
1921 caaagatgat gacacaacta gggtagatga atccctcaac ataaaggtag aagctgagga
1981 agaaaaagca aaatctggag atgaaacgaa taaagaagaa gatgaagatg atgaagaagc
2041 agaagaggag gaggaggagg aagaagaaga agaggatgaa gatgatgatg acaacaatga
2101 ggaagaggag tttgagtgct atccaccagg catgaaagtc caagtgcggt atggacgagg
2161 gaaaaatcaa aaaatgtatg aagctagtat taaagattct gatgtcgaag gtggagaggt
2221 cctttacttg gtgcattact gcggatggaa tgtgagatac gatgaatgga ttaaagcaga
2281 taaaatagta agacctgctg ataaaaatgt gccaaagata aaacatcgga agaaaataaa
2341 gaataaatta gacaaagaaa aagacaaaga tgaaaaatac tctccaaaaa actgtaaact
2401 tcggcgcttg tccaaaccac catttcagac aaatccatct cctgaaatgg tatccaaact
2461 ggatctcact gatgccaaaa actctgatac tgctcatatt aagtccatag aaattacttc
2521 gatccttaat ggacttcaag cttctgaaag ttctgctgaa gacagtgagc aggaagatga
2581 gagaggtgct caagacatgg ataataatgg caaagaggaa tctaagattg atcatttgac
2641 caacaacaga aatgatctta tttcaaagga ggaacagaac agttcatctt tgctagaaga
2701 aaacaaagtt catgcagatt tggtaatatc caaaccagtg tcaaaatctc cagaaagatt
2761 aaggaaagat atagaagtat tatccgaaga tactgattat gaagaagatg aagtcacaaa
2821 aaagagaaag gatgtcaaga aggacacaac agataaatct tcaaaaccac aaataaaacg
2881 tggtaaaaga aggtattgca atacagaaga gtgtctaaaa actggatcac ctggcaaaaa
2941 ggaagagaag gccaagaaca aagaatcact ttgcatggaa aacagtagca acagctcttc
3001 agatgaagat gaagaagaaa caaaagcaaa gatgacacca actaagaaat acaatggttt
3061 ggaggaaaaa agaaaatctc tacggacaac tggtttctat tcaggatttt cagaagtggc
3121 agaaaaaagg attaaacttt taaataactc tgatgaaaga cttcaaaaca gcagggccaa
3181 agatcgaaaa gatgtctggt caagtattca gggacagtgg cctaaaaaaa cgctgaaaga
3241 gcttttttca gactctgata ctgaggctgc agcttcccca ccgcatcctg ccccagagga
3301 gggggtggca gaggagtcac tgcagactgt ggctgaagag gagagttgtt cacccagtgt
3361 agaactagaa aaaccacctc cagtcaatgt cgatagtaaa cccattgaag aaaaaacagt
3421 agaggtcaat gacagaaaag cagaatttcc aagtagtggc agtaattcag tgctaaatac
3481 ccctcctact acacctgaat cgccttcatc agtcactgta acagaaggca gccggcagca
3541 gtcttctgta acagtatcag aaccactggc tccaaaccaa gaagaggttc gaagtatcaa
3601 gagtgaaact gatagcacaa ttgaggtgga tagtgttgct ggggagctcc aagacctcca
3661 gtctgaaggg aatagctcgc cagcaggttt tgatgccagt gtgagctcaa gcagtagtaa
3721 tcagccagaa ccagaacatc ctgaaaaagc ctgtacaggt cagaaaagag tgaaagatgc
3781 tcagggagga ggaagttcat caaaaaagca gaaaagaagc cataaagcaa cagtggtaaa
3841 caacaaaaag aagggaaaag gcagtgcccc acactgacct cctgctgctc ttccaggaga
3901 ctcctgccac ctccactgcc tgacctttgc tagcagccgg cttggctgca cttcagtgca
3961 gaaaagggtt attcggccag ctccccgagg ttctgctgag cccatatgac ttccaggcgc
4021 aaatagtagt gatagtgaag aactttcagc tggtgaaagt ataactaaga gtcagccagt
4081 caaatcagtt tccactggaa tgaagtctca tagtaccaaa tctcccgcaa ggacgcagtc
4141 tccaggaaaa tgtggaaaga atggtgataa ggatcctgat ctcaaggaac ccagtaatcg
4201 attacccaaa gtttacaaat ggagttttca gatgtcggac ctggaaaata tgacaagtgc
4261 cgaacgcatc acaattcttc aagaaaaact tcaagaaatc agaaaacatt atctgtcatt
4321 aaaatctgaa gtagcttcca ttgatcggag gagaaagcgt ttaaagaaga aagagagaga
4381 aagtgctgct acatcctcat cctcctcttc accttcatcc agttccataa cagctgctgt
4441 tatgttaact ttagctgaac cgtcaatgtc cagcgcatca caaaatggaa tgtcagttga
4501 gtgcaggtga cagcaggact tgctaaagca ctttgcactt aatggctgtt gagggccact
4561 ttttttttat actgcacagt ggcacaaaaa aatatcagac aagcactatt ttatatttaa
4621 aaattgtttc ttgacaagct gacttggcac ttaagtgcac ttttttatga agaaaaagta
4681 caatgaactg cttttcctca agcaataatt gtttccaact tgtctgggaa ttgtgtgtct
4741 ggtaactgga aggccttcca ctgtggcaaa tggaggcttt tcactgcctg tagagacaat
4801 acagtaagca tagttaaggg gtgggtcaga acatgttaag ataacttact gtatatgtat
4861 tcccttgtat tttgttaaag ctggaacatt tgatattttt ccatttattt atgaaaaaat
4921 atgaacctat tttcatttgt acaaggtaat tgttttttaa agcaagtcac cttagggtgg
4981 ctttaattgt ataagtcaag cacatgtaat aaattcaaaa cctgcagtta acaggatatt
5041 agacatcaat cctggtaacc aaatattaaa gattctcttt aaaaaagact gaacatgttt
5101 acaggtttga attaggctaa aaggtcttgc agtggctttt catggccctt c
//