LOCUS BC129932 5391 bp mRNA linear HUM 02-JAN-2007
DEFINITION Homo sapiens stereocilin, mRNA (cDNA clone IMAGE:40070700),
complete cds.
ACCESSION BC129932
VERSION BC129932.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5391)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 5391)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (22-DEC-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCG Plate: 6 Row: e Column: 1
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..5391
/db_xref="H-InvDB:HIT000390005"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:40070700"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_282"
/note="Vector: pCR-Blunt II-TOPO; Clone identification
sequence tag: NA"
gene 1..5391
/gene="STRC"
/db_xref="GeneID:161497"
/db_xref="HGNC:HGNC:16035"
/db_xref="MIM:606440"
CDS 77..2179
/gene="STRC"
/codon_start=1
/product="STRC protein"
/protein_id="AAI29933.1"
/db_xref="GeneID:161497"
/db_xref="HGNC:HGNC:16035"
/db_xref="MIM:606440"
/translation="MALSLWPLLLLLLLLLLLSFAVTLAPTGPHSLDPGLSFLKSLLS
TLDQAPQGSLSRSRFSTFLANISSSFEPGRMGEGPVGEPPPLQPPALRLHDFLVTLRG
SPDWEPMLGLLGDMLALLGQEQTPRDFLVHQAGVLGGLVEVLLGALVPGGPPTPTRPP
CTRDGPSDCVLAADWLPSLLLLLEGTRWQALVQVQPSVDPTNATGLDGREAAPHFLQG
LLGLLTPTGELGSKEALWGGLLRTVGAPLYAAFQEGLLRVTHSLQDEVFSILGQPEPD
TNGQCQGGNLQQLLLWGVRHNLSWDVQALGFLSGSPPPPPALLHCLSTGVPLPRASQP
SAHISPRQRRAITVEALCENHLGPAPPYSISNFSIHLLCQHTKPATPQPHPSTTAICQ
TAVWYAVSWAPGAQGWLQACHDQFPDEFLDAICSNLSFSALSGSNRRLVKRLCAGLLP
PPTSCPEGLPPVPLTPDIFWGCFLENETLWAERLCGEASLQAVPPSNQAWVQHVCQGP
TPDVTASPPCHIGPCGERCPDGGSFLVMVCANDTMYEVLVPFWPWLAGQCRISRGGND
TCFLEGLLGPLLPSLPPLGPSPLCLTPGPFLLGMLSQLPRCQSSVPALAHPTRLHYLL
RLLTFLLGPGAGGAEAQGMLGRALLLSSLPDNCSFWDAFRPEGRRSVLRTIGEYLNKM
RSSQPHQALNPLSTPALV"
BASE COUNT 1013 a 1656 c 1510 g 1212 t
ORIGIN
1 cctgccctca cctggctatc ccacacaggt gagaataacc agaactcacc tccggtacca
61 gtgttcactt ggaaacatgg ctctcagcct ctggcccctg ctgctgctgc tgctgctgct
121 gctgctgctg tcctttgcag tgactctggc ccctactggg cctcattccc tggaccctgg
181 tctctccttc ctgaagtcat tgctctccac tctggaccag gctccccagg gctccctgag
241 ccgctcacgg ttctctacat tcctggccaa catttcttct tcctttgagc ctgggagaat
301 gggggaagga ccagtaggag agcccccacc tctccagccg cctgctctgc ggctccatga
361 ttttctagtg acactgagag gtagccccga ctgggagcca atgctagggc tgctagggga
421 tatgctggca ctgctgggac aggagcagac tccccgagat ttcctggtgc accaggcagg
481 ggtgctgggt ggacttgtgg aggtgctgct gggagcctta gttcctgggg gcccccctac
541 cccaactcgg cccccatgca cccgtgatgg gccgtctgac tgtgtcctgg ctgctgactg
601 gttgccttct ctgctgctgt tgttagaggg cacacgctgg caagctctgg tgcaggtgca
661 gcccagtgtg gaccccacca atgccacagg cctcgatggg agggaggcag ctcctcactt
721 tttgcagggt ctgttgggtt tgcttacccc aacaggggag ctaggctcca aggaggctct
781 ttggggcggt ctgctacgca cagtgggggc ccccctctat gctgcctttc aggaggggct
841 gctccgtgtc actcactccc tgcaggatga ggtcttctcc attttggggc agccagagcc
901 tgataccaat gggcagtgcc agggaggtaa ccttcaacag ctgctcttat ggggcgtccg
961 gcacaacctt tcctgggatg tccaggcgct gggctttctg tctggatcac cacccccacc
1021 ccctgccctc cttcactgcc tgagcacggg cgtgcctctg cccagagctt ctcagccgtc
1081 agcccacatc agcccacgcc aacggcgagc catcactgtg gaggccctct gtgagaacca
1141 cttaggccca gcaccaccct acagcatttc caacttctcc atccacttgc tctgccagca
1201 caccaagcct gccactccac agccccatcc cagcaccact gccatctgcc agacagctgt
1261 gtggtatgca gtgtcctggg caccaggtgc ccaaggctgg ctacaggcct gccacgacca
1321 gtttcctgat gagtttttgg atgcgatctg cagtaacctc tccttttcag ccctgtctgg
1381 ctccaaccgc cgcctggtga agcggctctg tgctggcctg ctcccacccc ctaccagctg
1441 ccctgaaggc ctgccccctg ttcccctcac cccagacatc ttttggggct gcttcttgga
1501 gaatgagact ctgtgggctg agcgactgtg tggggaggca agtctacagg ctgtgccccc
1561 cagcaaccag gcttgggtcc agcatgtgtg ccagggcccc accccagatg tcactgcctc
1621 cccaccatgc cacattggac cctgtgggga acgctgcccg gatgggggca gcttcctggt
1681 gatggtctgt gccaatgaca ccatgtatga ggtcctggtg cccttctggc cttggctagc
1741 aggccaatgc aggataagtc gtgggggcaa tgacacttgc ttcctagaag ggctgctggg
1801 cccccttctg ccctctctgc caccactggg accatcccca ctctgtctga cccctggccc
1861 cttcctcctt ggcatgctat cccagttgcc acgctgtcag tcctctgtcc cagctcttgc
1921 tcaccccaca cgcctacact atctcctccg cctgctgacc ttcctcttgg gtccaggggc
1981 tgggggcgct gaggcccagg ggatgctggg tcgggcccta ctgctctcca gtctcccaga
2041 caactgctcc ttctgggatg cctttcgccc agagggccgg cgcagtgtgc tacggacgat
2101 tggggaatac ctgaacaaga tgaggagcag ccaaccccat caggctttga acccactgtc
2161 aaccccagct ctggtataag caagatggag ctgctggcct gctttagtcc tgtgctgtgg
2221 gatctgctcc agagggaaaa gagtgtttgg gccctgcaga ttctagtgca ggcgtacctg
2281 catatgcccc cagaaaacct ccagcagctg gtgctttcag cagagaggga ggctgcacag
2341 ggcttcctga cactcatgct gcaggggaag ctgcagggga agctgcaggt accaccatcc
2401 gaggagcagg ccctgggtcg cctgacagcc ctgctgctcc agcggtaccc acgcctcacc
2461 tcccagctct tcattgacct gtcaccactc atccctttct tggctgtctc tgacctgatg
2521 cgcttcccac catccctgtt agccaacgac agtgtacagc agggctacag agggtcagag
2581 gaaaacagtt tggaggaaga caaagggtta agacccatga ctcctcgcag cctggctgcc
2641 atccgggatt acagcccagg aatgaggcct gaacagaagg aggctctggc aaagcgactg
2701 ctggcccctg aactgtttgg ggaagtgcct gcctggcccc aggagctgct gtgggcagtg
2761 ctgcccctgc tcccccacct ccctctggag aactttttgc agctcagccc tcaccagatc
2821 caggccctgg aggatagctg gccagcagca ggtctggggc cagggcatgc ccgccatgtg
2881 ctgcgcagcc tggtaaacca gagtgtccag gatggtgagg agcaggtacg caggtggcat
2941 atgaacttct gggtgtgttg cgctcatctg gaggagcggt gctgagcccc cgggagctgc
3001 gggtctgggc ccctctcttc tctcagctgg gcctccgctt ccttcaggag ctgtcagagc
3061 cccagcttag agccatgctt cctgtcctgc agggaactag tgttacacct gctcaggctg
3121 tcctgctgct tggacggctc cttcctaggc acgatctatc cctggaggaa ctctgctcct
3181 tgcaccttct gctaccaggc ctcagccccc agacactcca ggccatccct aggcgagtcc
3241 tggtcggggc ttgttcctgc ctggcccctg aactgtcacg cctctcagcc tgccagaccg
3301 cagcactgct gcagaccttt cgggttaaag atggtgttaa aaatatgggt acaacaggtg
3361 ctggtccagc tgtgtgtatc cctggtcagc ctattcccac cacctggcca gactgcctgc
3421 ttcccctgct cccattaaag ctgctacaac tggattcctt ggctcttctg gcaaatcgaa
3481 gacgctactg ggagctgccc tggtctgagc agcaggcaca gtttctctgg aagaagatgc
3541 aagtacccac caacctgacc ctcaggaatc tacaggctct gggcaccctg gcaggaggca
3601 tgtcctgtga gtttctgcag cagatcaact ccatggtaga cttccttgaa gtggtgcaca
3661 tgatctatca gctgcccact agagttcgag ggagcctgag ggcctgtatc tgggcagagc
3721 tacagcggag gatggcaatg ccagaaccag aatggacaac tgtagggcca gaactgaacg
3781 ggctggatag caagctactc ctggacttac caatccagtt gatggacaga ctatccaatg
3841 aatccattat gttggtggtg gagctggtgc aaagagctcc agagcagctg ctggcactga
3901 cccccctcca ccaggcagcc ctggcagaga gggcactaca aaacctggtt cctgtctaca
3961 aggcctggcc cgttttgcct ctgggttctg ttccttgata atatgcttca cgttacttgt
4021 ccatacctct tggagtccga gaaatctctt ggagtccacc tctcagtctt tctgcctgct
4081 cctatctggt ctcattgctt aagaaagtga acaaaggctc caaaggagac tccagtctca
4141 ggggaagtgc tggagacctt aggccctttg gttggattcc tggggacaga gagcacacga
4201 cagatccccc tacagatcct gctgtcccat ctcagtcagc tgtaaggctt ctgcctagga
4261 gagacatttg ccacagagct gggatggctg ctattgcagg agtctgttct tgggaaacca
4321 gagttgtgga gccaggatga agtagagcaa gctggacgcc tagtattcac tctgtctact
4381 gaggcaattt ccttgatccc cagggaggcc ttgggtccag agaccctgga gcggcttcta
4441 gaaaaacagc agagctggga gcagagcaga gttggacagc tgtgtagggg gccacagctt
4501 gctgccaaga aagcagccct ggtagcaggg gtggtgcgac cagctgctga ggatcttcca
4561 gttgtggggt cccccccggg gatttggtcc tgagcagatc ctgcagctcg gtagactctt
4621 aataggtctg ggagatcagg aactacagga gctgatccta gtggactggg gagtgctgag
4681 caccctgggg cagatagatg gctggagctc cactcagctc cgcattgtgg tctccagttt
4741 cctacggcag agtggtcggc atgtgagcca cctggacttc gttcatctga cagcgctggg
4801 ttatactctc tgtggactgc ggccagagga gctccagcac atcagcagtt gggagtttag
4861 ccaagcagct ctcttcctcg gcaccctgca tctgcagtgc tctgaggaac aactggagtt
4921 tctggcccac ctctttgtac tgcctggtgg gtttggccca atcagtaact gggggcctga
4981 gatcttcact gaaattggca ccatagcagc tgggatccca gacctggctc tttcagcact
5041 gctgcgggga cagatccagg gcgttactcc tcttgccatt tctgtcatcc ctcctcctaa
5101 atttgctgtg gtgtttagtc ccatccaact atctagtctc gccagtgctc aggctgtggc
5161 tgtcactcct gagcaaatgg cctttctgag tcctgagcag cgacgagcag ttgcatgggc
5221 ccaacatgag ggaaaggaga gcccagaaca gcaaggtcga agtacagcct ggggcctcca
5281 ggactggtca cgaccttcct ggtccctggt attgactatc agcttccttg gccacctgct
5341 atgagcctgt ctctacagta gaaggagatt gtggggagag aaaggtttat g
//