LOCUS BC128585 2777 bp mRNA linear HUM 05-DEC-2006
DEFINITION Homo sapiens piggyBac transposable element derived 1, mRNA (cDNA
clone MGC:157743 IMAGE:40128523), complete cds.
ACCESSION BC128585
VERSION BC128585.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2777)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2777)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 32 Row: h Column: 8.
FEATURES Location/Qualifiers
source 1..2777
/db_xref="H-InvDB:HIT000389939"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:157743 IMAGE:40128523"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_282"
/note="Vector: pCR-Blunt II-TOPO; Clone identification
sequence tag: AGTATATA sequenced from the reverse primer"
gene 1..2777
/gene="PGBD1"
/gene_synonym="dJ874C20.4"
/gene_synonym="HUCEP-4"
/gene_synonym="SCAND4"
/db_xref="GeneID:84547"
/db_xref="HGNC:HGNC:19398"
CDS 268..2697
/gene="PGBD1"
/gene_synonym="dJ874C20.4"
/gene_synonym="HUCEP-4"
/gene_synonym="SCAND4"
/codon_start=1
/product="piggyBac transposable element derived 1"
/protein_id="AAI28586.1"
/db_xref="GeneID:84547"
/db_xref="HGNC:HGNC:19398"
/translation="MYEALPGPAPENEDGLVKVKEEDPTWEQVCNSQEGSSHTQEICR
LRFRHFCYQEAHGPQEALAQLRELCHQWLRPEMHTKEQIMELLVLEQFLTILPKELQP
CVKTYPLESGEEAVTVLENLETGSGDTGQQASVYIQGQDMHPMVAEYQGVSLECQSLQ
LLPGITTLKCEPPQRPQGNPQEVSGPVPHGSAHLQEKNPRDKAVVPVFNPVRSQTLVK
TEEETAQAVAAEKWSHLSLTRRNLCGNSAQETVMSLSPMTEEIVTKDRLFKAKQETSE
EMEQSGEASGKPNRECAPQIPCSTPIATERTVAHLNTLKDRHPGDLWARMHISSLEYA
AGDITRKGRKKDKARVSELLQGLSFSGDSDVEKDNEPEIQPAQKKLKVSCFPEKSWTK
RDIKPNFPSWSALDSGLLNLKSEKLNPVELFELFFDDETFNLIVNETNNYASQKNVSL
EVTVQEMRCVFGVLLLSGFMRHPRREMYWEVSDTDQNLVRDAIRRDRFELIFSNLHFA
DNGHLDQKDKFTKLRPLIKQMNKNFLLYAPLEEYYCFDKSMCECFDSDQFLNGKPIRI
GYKIWCGTTTQGYLVWFEPYQEESTMKVDEDPDLGLGGNLVMNFADVLLERGQYPYHL
CFDSFFTSVKLLSALKKKGVRATGTIRENRTEKCPLMNVEHMKKMKRGYFDFRIEENN
EIILCRWYGDGIISLCSNAVGIEPVNEVSCCDADNEEIPQISQPSIVKVYDECKEGVA
KMDQIISKYRVRIRSKKWYSILVSYMIDVAMNNAWQLHRACNPGASLDPLDFRRFVAH
FYLEHNAHLSD"
BASE COUNT 843 a 564 c 686 g 684 t
ORIGIN
1 gggagccttt cacgaggtca gctacgtctt tgttgtgcgc gttcctgaac ttttggtcca
61 ttaaccaaca attagacacg ccggtattca gtgcctggcg cggtgctaga tgctgggtgt
121 aatctcagaa aaatacattc aggggcgcgc ctgagggtgc tggctgctgg catctcaggt
181 gctttacgtg cattcgtgaa gaagcccatc agtatttctt gaataccaga ccccaagcta
241 agtgaagctt tagcctctaa gctcaacatg tatgaagctt tgccaggccc tgctcctgaa
301 aatgaagatg gccttgtgaa agtgaaggag gaagatccca cctgggagca ggtgtgcaac
361 tcacaggagg gcagctccca cactcaggag atttgccgcc tgcgctttcg gcacttctgc
421 taccaggagg ctcacggacc ccaggaagct ctggcccaac tccgagaact ttgtcatcaa
481 tggctgagac cggagatgca caccaaggaa cagataatgg aactgctggt gctggagcag
541 ttcctgacca tcctgcccaa ggagctccag ccctgtgtga agacatatcc tctggagagt
601 ggagaggagg cagtgacagt gctggagaat ctagagacag gaagtggaga cacaggacaa
661 caggcctctg tctatattca gggacaggac atgcacccaa tggtggcaga atatcaagga
721 gtctctttgg agtgtcagag cctccagctc ctgcctggga taaccaccct gaagtgtgaa
781 cctccacagc gtcctcaagg gaacccccaa gaagtgagtg ggcctgttcc ccacggatca
841 gctcatctcc aggaaaaaaa ccccagagac aaggctgtag tgcctgtgtt taacccagtc
901 aggtcccaga cattggtgaa gactgaggaa gaaacagccc aggccgttgc tgcagagaag
961 tggtcacatc tgagtctgac tcggaggaac ctctgtggga actcagctca ggagacagtt
1021 atgagcctca gtccgatgac tgaagaaatt gtaactaaag atagattgtt taaagcaaag
1081 caagaaactt ctgaagaaat ggaacaaagt ggagaagcct caggaaagcc caacagagag
1141 tgtgcacccc agattccttg tagtactcct attgctactg aaaggacagt tgcacatttg
1201 aacactctga aggaccgtca cccaggtgat ttgtgggccc gcatgcacat ctcatccctg
1261 gaatatgctg caggagacat tacccgaaaa gggagaaaaa aagacaaagc tcgagtgagt
1321 gaactgctcc aaggcctctc attctctggt gactcagatg tggaaaaaga taatgagcct
1381 gagatccagc ctgctcaaaa gaagttaaag gtatcatgtt tcccagaaaa gagttggacc
1441 aaaagagaca ttaaacccaa ttttccaagc tggtcagcac tggattctgg acttttgaat
1501 ctcaagagcg aaaagttgaa cccagtagag ctttttgaat tattttttga tgatgaaaca
1561 ttcaacttaa ttgtcaatga aaccaataat tatgcttctc agaaaaatgt cagcttggaa
1621 gtcacagttc aggaaatgag gtgtgtgttt ggtgtcttac ttttgagtgg atttatgagg
1681 catcctagaa gggaaatgta ttgggaagtc tctgacaccg atcagaacct ggttagagat
1741 gcaatcagaa gggacagatt tgaattgatt ttctcaaacc tgcactttgc agataatggc
1801 cacctagatc aaaaagataa gtttacaaag ttgagacctc tcataaaaca aatgaataaa
1861 aatttcctct tgtatgctcc cctggaagaa tactattgct ttgataagtc aatgtgtgaa
1921 tgctttgata gtgaccaatt cctgaatgga aagcctatta gaattggcta taaaatttgg
1981 tgtggtacaa ccacacaggg ttatctggtt tggtttgaac cctatcaaga agaatcaact
2041 atgaaggtag atgaggatcc tgatcttggg ttaggtggaa atctagtgat gaacttcgct
2101 gatgttcttt tagagagagg tcagtatccc tatcacctgt gttttgatag cttctttaca
2161 agtgtcaaat tgttgtcagc cttgaaaaag aagggggtga gggcaacagg aacaattcgt
2221 gagaacagga ccgaaaaatg tccccttatg aatgtagaac atatgaaaaa aatgaagaga
2281 gggtattttg atttccgaat agaagaaaac aatgagataa ttttgtgtcg ttggtatggg
2341 gatggcatta tcagtctgtg ctccaatgct gtgggcatag aaccagtcaa tgaggtaagc
2401 tgttgtgatg ctgataacga agaaatccct cagataagtc aaccatccat agtaaaagtg
2461 tatgatgaat gcaaggaagg tgtagctaaa atggatcaaa ttatttcgaa atacagggtg
2521 aggataagaa gcaagaaatg gtactcaatt ttggtgagct acatgattga tgtagccatg
2581 aacaatgcat ggcaactaca cagagcctgt aacccaggtg cttctctaga ccccttggat
2641 tttcggagat ttgttgcaca tttctacttg gaacacaatg ctcatctgtc agattagggt
2701 acataaaatg gacatagtgc agacattaat aagacataga aaaataataa ttatacatgc
2761 tgttgtaccc tcccaaa
//