LOCUS BC128584 3031 bp mRNA linear HUM 05-DEC-2006
DEFINITION Homo sapiens PITPNM family member 3, mRNA (cDNA clone MGC:157741
IMAGE:40128724), complete cds.
ACCESSION BC128584
VERSION BC128584.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3031)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3031)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 32 Row: h Column: 16.
FEATURES Location/Qualifiers
source 1..3031
/db_xref="H-InvDB:HIT000389938"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:157741 IMAGE:40128724"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_282"
/note="Vector: pCR-Blunt II-TOPO; Clone identification
sequence tag: GCTCTTC sequenced from the reverse primer"
gene 1..3031
/gene="PITPNM3"
/gene_synonym="NIR1"
/gene_synonym="RDGBA3"
/db_xref="GeneID:83394"
/db_xref="HGNC:HGNC:21043"
/db_xref="MIM:608921"
CDS 89..3013
/gene="PITPNM3"
/gene_synonym="NIR1"
/gene_synonym="RDGBA3"
/codon_start=1
/product="PITPNM family member 3"
/protein_id="AAI28585.1"
/db_xref="GeneID:83394"
/db_xref="HGNC:HGNC:21043"
/db_xref="MIM:608921"
/translation="MAKAGRAGGPPPGGGAPWHLRNVLSDSVESSDDEFFDAREEMAE
GKNAILIGMSQWNSNDLVEQIETMGKLDEHQGEGTAPCTSSILQEKQRELYRVSLRRQ
RFPAQGSIEIHEDSEEGCPQRSCKTHVLLLVLHGGNILDTGAGDPSCKAADIHTFSSV
LEKVTRAHFPAALGHILIKFVPCPAICSEAFSLVSHLNPYSHDEGCLSSSQDHVPLAA
LPLLAISSPQYQDAVATVIERANQVYREFLKSSDGIGFSGQVCLIGDCVGGLLAFDAI
CYSAGPSGDSPASSSRKGSISSTQDTPVAVEEDCSLASSKRLSKSNIDISSGLEDEEP
KRPLPRKQSDSSTYDCEAITQHHAFLSSIHSSVLKDESETPAAGGPQLPEVSLGRFDF
DVSDFFLFGSPLGLVLAMRRTVLPGLDGFQVRPACSQVYSFFHCADPSASRLEPLLEP
KFHLVPPVSVPRYQRFPLGDGQSLLLADALHTHSPLFLEGSSRDSPPLLDAPASPPQA
SRFQRPGRRMSEGSSHSESSESSDSMAPVGASRITAKWWGSKRIDYALYCPDVLTAFP
TVALPHLFHASYWESTDVVAFILRQVMRYESVNIKESARLDPAALSPANPREKWLRKR
TQVKLRNVTANHRANDVIAAEDGPQVLVGRFMYGPLDMVALTGEKVDILVMAEPSSGR
WVHLDTEITNSSGRITYNVPRPRRLGVGVYPVKMVVRGDQTCAMSYLTVLPRGMECVV
FSIDGSFAASVSIMGSDPKVRPGAVDVVRHWQDLGYMILYITGRPDMQKQRVVSWLSQ
HNFPQGMIFFSDGLVHDPLRQKAIFLRNLMQECFIKISAAYGSTKDISVYSVLGLPAS
QIFIVGRPTKKYQTQCQFLSEGYAAHLAALEASHRSRPKKNNSRMILRKGSFGLHAQP
EFLRKRNHLRRTMSVQQPDPPAANPKPERAQSQPESDKDHERPLPALSWARGPPKFES
VP"
BASE COUNT 576 a 990 c 933 g 532 t
ORIGIN
1 gagtccgttc ggggccggag gcggtcgggg ccgggcccgg gaagcgcgag gagcgcgcgt
61 agcgccgccg gagcccgccg cccgggacat ggccaaggcg ggccgtgcag gtggtcctcc
121 cccgggcggc ggtgccccct ggcaccttcg aaatgtcctc agtgactctg tggagagctc
181 agatgatgaa ttctttgatg ccagagagga gatggctgaa gggaagaatg ccatcctcat
241 tgggatgagc cagtggaact ccaatgacct cgtggagcag atcgagacca tggggaaact
301 ggacgagcat caaggagaag ggaccgcgcc gtgcacatcc agcatcctcc aggagaagca
361 gcgagaactg taccgggttt ccttgagaag acagaggttc ccagcccagg gaagcatcga
421 gatccacgaa gacagcgagg aaggctgccc gcagcgctcc tgcaagacac atgtcctcct
481 gctggtcctg catgggggaa acatcctgga cacgggtgcc ggggacccgt cctgcaaggc
541 agccgacatc cacaccttca gctccgtgct ggagaaggtc acacgagccc atttccctgc
601 tgccctgggc cacatcctca tcaagttcgt cccctgtcct gccatctgct ctgaggcttt
661 ctcgcttgtc tctcacctga acccctacag ccacgatgag ggctgcctca gcagcagcca
721 ggaccacgtc cctctggccg cccttcccct gttggccatc tcctccccgc agtaccagga
781 tgctgtcgcc accgtcatcg agcgagccaa ccaggtctac agagagttcc tgaagtcctc
841 tgatgggatt ggcttcagtg ggcaggtgtg tctcatcggg gactgtgtgg ggggcctcct
901 ggccttcgat gccatctgct acagtgcggg gccctcaggg gacagccctg ccagcagcag
961 ccggaagggg agcatcagca gcacccagga caccccagtc gcggtggagg aagattgcag
1021 cctggccagc agcaagcgtc tcagcaaaag caacattgac atctccagtg ggttggagga
1081 tgaggagccc aagaggccgt tgccgcggaa acagagcgac tcctccacct atgactgcga
1141 ggccatcacc cagcaccatg ccttcctctc aagcatccac tccagcgtgc taaaggatga
1201 gtctgagacc ccggcggctg gggggccgca gctccctgag gtcagcctgg gccgctttga
1261 cttcgatgtg tccgacttct tcctcttcgg ctcgccactg ggcctggtcc tggccatgcg
1321 gaggacggtg ctgcctgggc tggacggctt ccaggtgcgt cctgcctgca gccaggtcta
1381 cagcttcttc cattgcgcag acccctctgc ctcacggctc gagccactgc tggagcccaa
1441 gttccacctg gtgccgcctg tcagcgtgcc tcgctaccag aggttcccac tgggcgatgg
1501 gcagtccctc ctcctcgctg atgccctaca cacccacagc cccctcttcc tggagggcag
1561 ctcccgggac agcccgccac ttctggatgc ccctgcctcg ccccctcagg cctcgaggtt
1621 ccagcgccca ggacggagga tgagcgaggg gagctcccac agcgagagct cggagtcctc
1681 ggacagcatg gcacccgtgg gtgcctcccg catcacagcc aagtggtggg gaagcaagag
1741 gatcgactat gccctgtact gccctgatgt cctcacggcc ttccccaccg tggccctgcc
1801 ccacctcttc cacgccagtt actgggagtc cacagacgtg gtggccttca tcctgagaca
1861 ggtaatgcgc tatgagagcg tgaacatcaa ggaaagcgcc cgcctggacc ctgcagcact
1921 gagtcctgcc aacccccggg agaagtggct tcgtaagcgg actcaggtca agctgaggaa
1981 tgtcacggct aatcaccggg ccaatgatgt gattgctgct gaagatggcc cccaggtcct
2041 ggtggggcgg ttcatgtacg ggcccctcga catggtggct ctgactggag agaaggtgga
2101 catcctagta atggcagagc catcctcagg ccgctgggta cacctggaca cagagatcac
2161 caacagcagt ggtcgcatca catacaatgt gccgcggccc cggcgcctgg gggttggtgt
2221 ctatcctgtg aagatggtcg tcaggggcga ccagacctgt gccatgagct acctcacggt
2281 gttgcccagg ggcatggagt gtgtagtgtt cagcattgat gggtccttcg cggccagcgt
2341 gtctatcatg ggaagcgacc ccaaggtccg gccgggtgca gtggatgttg tccggcactg
2401 gcaggacttg ggctacatga tcctttacat cacgggacgg ccggacatgc agaagcagcg
2461 ggtggtgtcg tggctgtccc agcacaactt cccacagggc atgatcttct tctccgacgg
2521 gctggtgcat gacccgctgc ggcagaaggc catcttcctg cgcaacctca tgcaggagtg
2581 cttcatcaaa atcagtgcgg cctatggctc cacgaaggac atctctgtct acagcgtgct
2641 gggcctgcct gcctcccaga tcttcattgt gggccggccc accaagaagt accaaaccca
2701 gtgccagttc ctgagcgagg gctacgccgc acacctggcc gcgctggagg ccagccaccg
2761 ctcacgccca aagaagaaca actcgcgcat gatcctgcgc aagggcagct tcgggctgca
2821 cgcgcagcca gagttcctgc ggaagcgcaa ccacctgcgc agaaccatgt cagtgcagca
2881 gcccgacccg cccgccgcca accccaagcc cgagcgggcc cagagccagc ccgagtcgga
2941 caaagaccac gagcggccgc tgccggcgct cagctgggcg cgtgggcccc ccaagttcga
3001 gtcggtgccc tgaggggtgg gctgtgctca t
//