LOCUS BC128156 1718 bp mRNA linear HUM 19-MAR-2009 DEFINITION Homo sapiens tRNA isopentenyltransferase 1, mRNA (cDNA clone MGC:149243 IMAGE:40112698), complete cds. ACCESSION BC128156 VERSION BC128156.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1718) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1718) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (05-DEC-2006) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Baylor Human Genome Sequencing Center cDNA Library Preparation: Baylor Human Genome Sequencing Center cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAM Plate: 30 Row: d Column: 6 The stop codon of the CDS annotated on this record is located > 55 bases upstream of a splice junction, and therefore the mRNA is predicted to be subject to nonsense-mediated mRNA decay (NMD). FEATURES Location/Qualifiers source 1..1718 /db_xref="H-InvDB:HIT000389684" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:149243 IMAGE:40112698" /tissue_type="PCR rescued clones" /clone_lib="NIH_MGC_282" /note="Vector: pCR-Blunt II-TOPO; Clone identification sequence tag: CGATCTC sequenced from the reverse primer" gene 1..1718 /gene="TRIT1" /gene_synonym="IPT" /gene_synonym="MOD5" /db_xref="GeneID:54802" /db_xref="HGNC:HGNC:20286" CDS 15..833 /gene="TRIT1" /gene_synonym="IPT" /gene_synonym="MOD5" /codon_start=1 /product="TRIT1 protein" /protein_id="AAI28157.1" /db_xref="GeneID:54802" /db_xref="HGNC:HGNC:20286" /translation="MASVAAARAVPVGSGLRGLQRTLPLVVILGATGTGKSTLALQLG QRLGGEIVSADSMQVYEGLDIITNKVSAQEQRICRHHMISFVDPLVTNYTVVDFRNRA TALIEDIFARDKIPIVVGGTNYYIESLLWKVLVNTKPQEMGTEKVIDRKVELEKEDGL VLHKRLSQVDPEMAAKLHPHDKRKVARSLQVFEETGISHSEFLHRQHTEEGGGPLGGP LKFSNPCILWLHADQAVLDERLDKRVDDMLAAGLLEELRDFHRRYNQKNVSENR" BASE COUNT 480 a 391 c 436 g 411 t ORIGIN 1 cagactgcca taagatggcg tccgtggcgg ctgcacgagc agttcctgtg ggcagtgggc 61 tcaggggcct gcaacggacc ctacctcttg tagtgattct cggggccacg ggcaccggca 121 aatccacgct ggcgttgcag ctaggccagc ggctcggcgg tgagatcgtc agcgctgact 181 ccatgcaggt ctatgaaggc ctagacatca tcaccaacaa ggtttctgcc caagagcaga 241 gaatctgccg gcaccacatg atcagctttg tggatcctct tgtgaccaat tacacagtgg 301 tggacttcag aaatagagca actgctctga ttgaagatat atttgcccga gacaaaattc 361 ctattgttgt gggaggaacc aattattaca ttgaatctct gctctggaaa gttcttgtca 421 ataccaagcc ccaggagatg ggcactgaga aagtgattga ccgaaaagtg gagcttgaaa 481 aggaggatgg tcttgtactt cacaaacgcc taagccaggt ggacccagaa atggctgcca 541 agctgcatcc acatgacaaa cgcaaagtgg ccaggagctt gcaagttttt gaagaaacag 601 gaatctctca tagtgaattt ctccatcgtc aacatacgga agaaggtggt ggtccccttg 661 gaggtcctct gaagttctct aacccttgca tcctttggct tcatgctgac caggcagttc 721 tagatgagcg cttggataag agggtggatg acatgcttgc tgctgggctc ttggaggaac 781 taagagattt tcacagacgc tataatcaga agaatgtttc ggaaaataga tgaaatggct 841 caactaggtc catctccaaa gcccctgcta gcttttagga gcaatggctt atctgctgat 901 accctcctgt tcccagccag gactatcaac atggtatctt ccaatcaatt ggcttcaagg 961 aatttcacga gtacctgatc actgagggaa aatgcacact ggagactagt aaccagcttc 1021 taaagaaagg tattgaggct ctgaaacaag taactaagag atatgcccgg aaacaaaacc 1081 gatgggttaa aaaccgtttt ttgagcagac ctggtcccat tgtcccccct gtctatggct 1141 tagaggtatc tgatgtctcg aagtgggaag agtctgttct tgaacctgct cttgaaatcg 1201 tgcaaagttt catccagggc cacaagccta cagccactcc aataaagatg ccatacaatg 1261 aagctgagaa caagagaagt tatcacctgt gtgacctctg tgatcgaatc atcattgggg 1321 atcgcgaatg ggcagcgcac ataaaatcca aatcccactt gaaccaactg aagaaaagaa 1381 gaagattgga ctcagatgct gtcaacacca tagaaagtca gagtgtttcc ccagaccata 1441 acaaagaacc taaagagaag ggatccccag ggcagaatga tcaagagctg aaatgcagcg 1501 tttaagagac atgtccagtg gcctttggaa aggtggtggg gatccagttc aggagggagg 1561 ggtatgtttg tctcccagtc tgggcaaagg agtgctatgc ggaattctct gcatagcaga 1621 aaagctccca ccattttctt ttgatgtggt tttaaagtct cacgttctct ataatagaaa 1681 cagcaggtct tgtcagctcc ttgtgtggct gatgtgtt //