LOCUS BC128153 1597 bp mRNA linear HUM 30-AUG-2007 DEFINITION Homo sapiens visual system homeobox 2, mRNA (cDNA clone MGC:149240 IMAGE:40112640), complete cds. ACCESSION BC128153 VERSION BC128153.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1597) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1597) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (05-DEC-2006) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Baylor Human Genome Sequencing Center cDNA Library Preparation: Baylor Human Genome Sequencing Center cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAM Plate: 30 Row: d Column: 9. FEATURES Location/Qualifiers source 1..1597 /db_xref="H-InvDB:HIT000389681" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:149240 IMAGE:40112640" /tissue_type="PCR rescued clones" /clone_lib="NIH_MGC_282" /note="Vector: pCR-Blunt II-TOPO; Clone identification sequence tag: TGAATTAC sequenced from the reverse primer" gene 1..1597 /gene="VSX2" /gene_synonym="MCOP2" /gene_synonym="MCOPCB3" /gene_synonym="RET1" /db_xref="GeneID:338917" /db_xref="HGNC:HGNC:1975" /db_xref="MIM:142993" CDS 47..1132 /gene="VSX2" /gene_synonym="MCOP2" /gene_synonym="MCOPCB3" /gene_synonym="RET1" /codon_start=1 /product="visual system homeobox 2" /protein_id="AAI28154.1" /db_xref="GeneID:338917" /db_xref="HGNC:HGNC:1975" /db_xref="MIM:142993" /translation="MTGKAGEALSKPKSETVAKSTSGGAPARCTGFGIQEILGLNKEP PSSHPRAALDGLAPGHLLAARSVLSPAGVGGMGLLGPGGLPGFYTQPTFLEVLSDPQS VHLQPLGRASGPLDTSQTASSDSEDVSSSDRKMSKSALNQTKKRKKRRHRTIFTSYQL EELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRSSVMAE YGLYGAMVRHSIPLPESILKSAKDGIMDSCAPWLLGMHKKSLEAAAESGRKPEGERQA LPKLDKMEQDERGPDAQAAISQEELRENSIAVLRAKAQEHSTKVLGTVSGPDSLARST EKPEEEEAMDEDRPAERLSPPQLEDMA" BASE COUNT 335 a 503 c 492 g 267 t ORIGIN 1 ggggagctaa agacctgcgg cctcagcccc tccaaagaac agggagatga cggggaaagc 61 aggggaagcg ctgagcaagc ccaaatccga gacagtggcc aagagtacct cggggggcgc 121 cccggccagg tgcactgggt tcggcatcca ggagatcctg ggcttgaaca aggagccccc 181 gagctcccac ccgcgggcag cgctcgacgg cctggccccc gggcacttgc tggcggcgcg 241 ctcagtgctc agccccgcgg gggtgggcgg catggggctt ctggggcccg gggggctccc 301 tggcttctac acgcagccca ccttcctgga agtgctgtcc gacccgcaga gcgtccactt 361 gcagccattg ggcagagcat cggggccgct ggacaccagc cagacggcca gctcggattc 421 tgaagatgtt tcctccagcg atcgaaaaat gtccaaatct gctttaaacc agaccaagaa 481 acggaagaag cggcgacaca ggacaatctt tacctcttac cagctagagg agctggagaa 541 ggcattcaac gaagcccact acccagacgt ctatgcccgg gagatgctgg ccatgaaaac 601 ggagctgccg gaagacagga tacaggtctg gttccagaac cgtcgagcca agtggaggaa 661 gcgggagaag tgctggggcc ggagcagtgt catggcggag tatgggctct acggggccat 721 ggtgcggcac tccatccccc tgcccgagtc catcctcaag tcagccaagg atggcatcat 781 ggactcctgt gccccgtggc tactggggat gcacaaaaag tcgctggagg cagcagccga 841 gtcggggagg aagcccgagg gggaacgcca ggccctgccc aagctcgaca agatggagca 901 ggacgagcgg ggccccgacg ctcaggcggc catctcccag gaggaactga gggagaacag 961 cattgcggtg ctccgggcca aagctcagga gcacagcacc aaagtgctgg ggactgtgtc 1021 tgggccggac agcctggccc ggagtaccga gaagccagag gaggaggagg ccatggatga 1081 agacaggccg gcggagaggc tcagtccacc gcagctggag gacatggctt aggtcaaggc 1141 gcgctcagat gccggagccc caagactctg ctctcctcgg gccctgtggt gctgggagat 1201 gctctctgag gcaaggccca gacctggcct ctgccatcct ccctgttccc cacaggtcct 1261 ccatcacccc tggtggctgc aggcaccgct gggttctgac tctggaccat gctgagacat 1321 ccctcatcta gtcttgacct ctccagcatc ccagcctcag aagccttctt gctgcccaca 1381 acgtcccctc aagccccttc tctcaatccc tttgcaacgc tcactggttt tggccacccc 1441 ttgctctctg ttctcttgct ttaaagagtc ctccttccca gctctacatt ctgctctgcc 1501 catgcctaaa gcccattgct gcaaatgcat tgtgaattgc ctgccatggc tgtgacacag 1561 acggaggact ggaactgcaa ctccagcgtc ctcagca //