LOCUS BC128120 1175 bp mRNA linear HUM 05-DEC-2006
DEFINITION Homo sapiens retinal pigment epithelium-derived rhodopsin homolog,
mRNA (cDNA clone MGC:149202 IMAGE:40112275), complete cds.
ACCESSION BC128120
VERSION BC128120.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1175)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1175)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 30 Row: b Column: 13.
FEATURES Location/Qualifiers
source 1..1175
/db_xref="H-InvDB:HIT000389648"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:149202 IMAGE:40112275"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_282"
/note="Vector: pCR-Blunt II-TOPO; Clone identification
sequence tag: TGTACCAA sequenced from the reverse primer"
gene 1..1175
/gene="RRH"
/db_xref="GeneID:10692"
/db_xref="HGNC:HGNC:10450"
/db_xref="MIM:605224"
CDS 26..1039
/gene="RRH"
/codon_start=1
/product="retinal pigment epithelium-derived rhodopsin
homolog"
/protein_id="AAI28121.1"
/db_xref="GeneID:10692"
/db_xref="HGNC:HGNC:10450"
/db_xref="MIM:605224"
/translation="MLRNNLGNSSDSKNEDGSVFSQTEHNIVATYLIMAGMISIISNI
IVLGIFIKYKELRTPTNAIIINLAVTDIGVSSIGYPMSAASDLYGSWKFGYAGCQVYA
GLNIFFGMASIGLLTVVAVDRYLTICLPDVGRRMTTNTYIGLILGAWINGLFWALMPI
IGWASYAPDPTGATCTINWRKNDRSFVSYTMTVIAINFIVPLTVMFYCYYHVTLSIKH
HTTSDCTESLNRDWSDQIDVTKMSVIMICMFLVAWSPYSIVCLWASFGDPKKIPPPMA
IIAPLFAKSSTFYNPCIYVVANKKFRRAMLAMFKCQTHQTMPVTSILPMDVSQNPLAS
GRI"
BASE COUNT 323 a 248 c 246 g 358 t
ORIGIN
1 ggtgtttcgg tatcttccct ccaaaatgct aagaaataat ttaggcaaca gttcagactc
61 taaaaatgaa gatggctcgg tcttttcaca gactgaacac aatattgttg caacttactt
121 gattatggca ggtatgataa gtattatcag caacataata gttctgggca tcttcattaa
181 gtacaaggaa cttcggacac ccacaaatgc aattattatt aacctggctg ttactgatat
241 aggggtcagt agcattggct atcccatgtc tgctgcctca gatctgtatg gaagttggaa
301 atttggatac gcaggctgtc aggtttatgc tggattgaat attttttttg gaatggcaag
361 cattggatta ctcacggtcg tggctgtgga ccgatacctg accatctgcc ttcctgacgt
421 agggagaaga atgaccacca acacttacat cggcttgatt ctgggagcct ggatcaatgg
481 cctgttttgg gctttgatgc ctatcatagg gtgggctagt tatgccccag atcctactgg
541 tgctacgtgt accataaact ggaggaaaaa tgatagatct tttgtgtctt acaccatgac
601 agttattgcg ataaatttta ttgtgccctt gacagtgatg ttttactgct attaccatgt
661 cacgctatcc attaaacatc acactaccag tgactgcact gagtccctca acagagactg
721 gtcagatcag atagatgtaa caaagatgtc tgtgatcatg atctgcatgt ttctggtggc
781 atggtcccct tattccatcg tgtgcttatg ggcttctttt ggtgacccaa agaagattcc
841 tccccccatg gccatcatag ctccactgtt tgcaaaatct tctacattct ataacccctg
901 catttatgtg gttgctaata aaaagtttcg gagggcaatg cttgccatgt tcaaatgtca
961 gactcaccaa acaatgcctg tgacaagtat tttacccatg gatgtatctc aaaacccatt
1021 ggcttctgga agaatctgaa ataagagaaa aggacacact atcaaaacac tttagttttt
1081 tgacaatgct tttcttttaa atatgagccc atttagatca agtgcagaca tggatcattg
1141 tcctatgaga gtgtaagctc ctcaagcaca gctcg
//