LOCUS BC127657 578 bp mRNA linear HUM 22-NOV-2006 DEFINITION Homo sapiens protein tyrosine phosphatase, receptor type, C, mRNA (cDNA clone IMAGE:40119800), complete cds. ACCESSION BC127657 VERSION BC127657.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 578) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 578) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (18-NOV-2006) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Baylor Human Genome Sequencing Center cDNA Library Preparation: Baylor Human Genome Sequencing Center cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAM Plate: 32 Row: b Column: 16 This clone has the following problem: The cds is short compared to the longest cds in the locus. FEATURES Location/Qualifiers source 1..578 /db_xref="H-InvDB:HIT000389285" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:40119800" /tissue_type="PCR rescued clones" /clone_lib="NIH_MGC_282" /note="Vector: pCR-Blunt II-TOPO; Clone identification sequence tag: CAATTTA sequenced from the reverse primer" gene 1..578 /gene="PTPRC" /gene_synonym="B220" /gene_synonym="GP180" /gene_synonym="LCA" /gene_synonym="LY5" /gene_synonym="T200" /db_xref="GeneID:5788" /db_xref="HGNC:HGNC:9666" /db_xref="MIM:151460" CDS 30..134 /gene="PTPRC" /gene_synonym="B220" /gene_synonym="GP180" /gene_synonym="LCA" /gene_synonym="LY5" /gene_synonym="T200" /codon_start=1 /product="protein tyrosine phosphatase, receptor type, C" /protein_id="AAI27658.1" /db_xref="GeneID:5788" /db_xref="HGNC:HGNC:9666" /db_xref="MIM:151460" /translation="MYLWLKLLAFGFAFLDTEVFVTGQSPTPSPTGKN" BASE COUNT 185 a 85 c 80 g 228 t ORIGIN 1 agggacacgg ctgacttcca gatatgacca tgtatttgtg gcttaaactc ttggcatttg 61 gctttgcctt tctggacaca gaagtatttg tgacagggca aagcccaaca ccttccccca 121 ctggtaagaa ttaatattta tatttttact aattttattt tcttgttgca aagtttatat 181 atttaactac aattttctat tattaacact gaaattattt ttaaggataa attttataat 241 catgagtgat tcttgacatt cacttgttct taaactttct gcttatacgt tatagagttt 301 aataactacc taaacatgtt attaaatttg tatatatatt ttgtgtataa atagtaactt 361 ttcccaaact tgacagtaaa tcacacaaca ggtttctact ctcttttaat attttaagac 421 tataaaaaaa tgcatttaaa ttagataaca aaattttata gtctgaaagc aggttaacag 481 ctgtctatgt atgttataga tatgtagata acagatttgc atatgtctat atttctttaa 541 gagtatgttg cttttttcag tggtatgcaa aaccttta //