LOCUS BC127119 2414 bp mRNA linear HUM 17-JUL-2007
DEFINITION Homo sapiens xin actin-binding repeat containing 1, mRNA (cDNA
clone IMAGE:40125445), complete cds.
ACCESSION BC127119
VERSION BC127119.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2414)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2414)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-NOV-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 29 Row: p Column: 19
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..2414
/db_xref="H-InvDB:HIT000389177"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:40125445"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_283"
/note="Vector: pCR-Blunt II-TOPO with reversed insert;
Clone identification sequence tag: CGCCCAAC sequenced from
the reverse primer"
gene 1..2414
/gene="XIRP1"
/gene_synonym="DKFZp451D042"
/gene_synonym="Xin"
/db_xref="GeneID:165904"
/db_xref="HGNC:HGNC:14301"
/db_xref="MIM:609777"
CDS 304..1884
/gene="XIRP1"
/gene_synonym="DKFZp451D042"
/gene_synonym="Xin"
/codon_start=1
/product="XIRP1 protein"
/protein_id="AAI27120.1"
/db_xref="GeneID:165904"
/db_xref="HGNC:HGNC:14301"
/db_xref="MIM:609777"
/translation="MPPKKKPQLPPKPAHLTQSHPPQRLPKPLPLSPSFSSEVGQREH
QRGERDTAIPQPAKVPTTVDQGHIPLARCPSGHSQPSLQHGLSTTAPRPTKNQATGSN
AQSSEPPKLNALNHDPTSPQWGPGPSGEQPMEGSHQGAPESPDSLQRNQKELQGLLNQ
VQALEKEAASSVDVQALRRLFEAVPQLGGAAPQAPAAHQKPEASVEQAFGELTRVSTE
VAQLKEQTLARLLDIEEAVHKALSSMSSLQPEASARGHFQGPPKDHSAHKISVTVSSS
ARPSGSGQEVRGQTAVKNQAKVECHTEAQSQVKIRNHTEARGHTASTAPSTRRQETSR
EYLCPPRVLPSSRDSPSSPTFISIQSATRKPLETPSFKGNPDVSVKSTQLAQDIGQAL
LHQKGVQDKTGKKDITQCSVQPEPAPPSASPLPRGWQKSVLELQTGPGSSQHYGAMRT
VTEQYEEVDQFGNTVLMSSTTVTEQAEPPRNPGSHLGLHASPLLRQFLHSPAGFSSDL
TEAETVQVSCSYSQPAAQ"
BASE COUNT 608 a 786 c 614 g 406 t
ORIGIN
1 ccagggcagc aagaaggtgt ctgttggagc cagcagaaca gaaccaattt gaacaagaac
61 ctccagagga acgacgaacc ctgagaccac agctgctaca gaccacaaac accccatcag
121 ccaagagaga cccttgctgc tgtgacagga cctgactttc cagctggagc ccaccgtgct
181 gaggactcca tccagcaagc ctctgagccc ctgaaggacc cccttcttca ctcccacagc
241 agccctgctg gccagagaac ccctggaggg tcacagacaa agaccccaaa actggacccc
301 accatgcccc caaagaagaa gccgcagctg ccccctaaac ctgcacacct aacccagagc
361 caccctcctc agaggctgcc caagcccttg cctctatctc ccagcttttc ctcggaggtg
421 gggcaaagag aacaccaacg aggtgagaga gatacagcca tccctcagcc agccaaggtt
481 cccactactg tagaccaggg ccacatacct ctggccagat gtcccagtgg acatagccag
541 cccagcttac aacatggcct cagcaccacg gcccccaggc ccaccaagaa tcaggctaca
601 ggcagcaatg cccagagctc tgagcccccc aagctcaatg ccctcaacca tgatcccacc
661 tcaccacagt ggggccccgg cccctcagga gagcagccca tggaaggttc ccaccaaggg
721 gcccctgaga gccctgacag tctgcaaaga aaccagaaag agctccaggg cctcctgaac
781 caggtgcaag ccctggagaa ggaggccgca agcagtgtgg acgtgcaggc cctgcggagg
841 ctctttgagg ccgtgcccca gctgggaggg gctgctcctc aggctcctgc tgcccaccaa
901 aagcccgagg cctcagtgga gcaggccttt ggggagctga cacgggtcag cacggaagtt
961 gctcaactga aggaacagac cttggcaagg ctgctggaca ttgaagaggc tgtgcacaag
1021 gcactcagct ccatgtctag cctccagcct gaggccagtg ccagaggcca tttccaggga
1081 cctccaaaag accacagtgc ccacaagatc agtgtcacag tcagcagtag cgccaggccc
1141 agtggctcag gccaggaggt cagaggtcaa actgcagtca agaaccaagc caaggttgaa
1201 tgccacactg aggcccagag tcaagtcaag atcagaaatc acacagaggc cagaggtcac
1261 acagcctcaa ctgccccttc caccaggagg caggagacat caagagagta tttgtgccct
1321 cctcgggttt taccttccag ccgagattct ccctcctccc caacatttat ctccatccag
1381 tcggccacaa ggaagcctct agagactccc agctttaagg gcaaccctga tgtctcagtg
1441 aaaagcacac aactggctca ggacataggc caggccctgc tccaccagaa aggtgtccaa
1501 gacaaaactg ggaagaagga catcacccag tgctctgtgc aacctgaacc tgcccctccc
1561 tcagccagtc ccctgcccag agggtggcaa aagagtgttc tggagctaca gacggggcca
1621 gggagctcac aacactatgg agccatgaga accgtgactg aacagtatga ggaggtggac
1681 cagtttggga acacagtcct catgtcttcc accacagtca ccgagcaggc agagccaccc
1741 aggaacccag gctcccacct cgggctccac gcctccccct tgctgaggca gttcctgcac
1801 agcccagctg ggttcagcag tgacctgaca gaagctgaga cggtgcaggt gtcctgcagc
1861 tactcccagc cagctgccca gtgaggccca ccgcctccca ccacacctgc cacctgttcc
1921 tggcctccac tgccccagga ctgaagtggg tacctgcctc ctgtacactg gagcaaggac
1981 caagaggaaa tggcatcttc agaggattac tgtgggccat ttccctttcg cagttctttc
2041 aataggccca gttcttccaa atggaaaaag aaaggtctgg aagaggccca cagagttgca
2101 caggcgtggg ggtaggatgg gggctcccag ctgcttgtgg aggatgtaat atatacagac
2161 acacacatgt ttttcacaca ggcctggccc acgcatcgac atgtgtgaat ttgcacacca
2221 ctgcctgaat tggagccccc cagagtgtcc ctctacccag agtttttatt tctttaatta
2281 gtctgagtgt tcccagccat ctgctcctta atccctggag aggaacagag ccaactggac
2341 acagcgttgg tctctgtttg gaatcactgt gaggtctcca gaaggacctg gccgccagcc
2401 ccttcatcac catc
//