LOCUS BC126940 1709 bp mRNA linear HUM 06-NOV-2006
DEFINITION Homo sapiens ceramide kinase, mRNA (cDNA clone MGC:141854
IMAGE:40084110), complete cds.
ACCESSION BC126940
VERSION BC126940.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1709)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1709)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-NOV-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 31 Row: e Column: 12.
FEATURES Location/Qualifiers
source 1..1709
/db_xref="H-InvDB:HIT000389104"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:141854 IMAGE:40084110"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_282"
/note="Vector: pCR-Blunt II-TOPO; Clone identification
sequence tag: NA"
gene 1..1709
/gene="CERK"
/gene_synonym="dA59H18.2"
/gene_synonym="dA59H18.3"
/gene_synonym="DKFZp434E0211"
/gene_synonym="FLJ21430"
/gene_synonym="FLJ23239"
/gene_synonym="hCERK"
/gene_synonym="KIAA1646"
/gene_synonym="LK4"
/db_xref="GeneID:64781"
/db_xref="HGNC:HGNC:19256"
/db_xref="MIM:610307"
CDS 51..1664
/gene="CERK"
/gene_synonym="dA59H18.2"
/gene_synonym="dA59H18.3"
/gene_synonym="DKFZp434E0211"
/gene_synonym="FLJ21430"
/gene_synonym="FLJ23239"
/gene_synonym="hCERK"
/gene_synonym="KIAA1646"
/gene_synonym="LK4"
/codon_start=1
/product="ceramide kinase"
/protein_id="AAI26941.1"
/db_xref="GeneID:64781"
/db_xref="HGNC:HGNC:19256"
/db_xref="MIM:610307"
/translation="MGATGAAEPLQSVLWVKQQRCAVSLEPARALLRWWRSPGPGAGA
PGADACSVPVSEIIAVEETDVHGKHQGSGKWQKMEKPYAFTVHCVKRARRHRWKWAQV
TFWCPEEQLCHLWLQTLREMLEKLTSRPKHLLVFINPFGGKGQGKRIYERKVAPLFTL
ASITTDIIVTEHANQAKETLYEINIDKYDGIVCVGGDGMFSEVLHGLIGRTQRSAGVD
QNHPRAVLVPSSLRIGIIPAGSTDCVCYSTVGTSDAETSALHIVVGDSLAMDVSSVHH
NSTLLRYSVSLLGYGFYGDIIKDSEKKRWLGLARYDFSGLKTFLSHHCYEGTVSFLPA
QHTVGSPRDRKPCRAGCFVCRQSKQQLEEEQKKALYGLEAAEDVEEWQVVCGKFLAIN
ATNMSCACRRSPRGLSPAAHLGDGSSDLILIRKCSRFNFLRFLIRHTNQQDQFDFTFV
EVYRVKKFQFTSKHMEDEDSDLKEGGKKRFGHICSSHPSCCCTVSNSSWNCDGEVLHS
PAIEVRVHCQLVRLFARGIEENPKPDSHS"
BASE COUNT 382 a 468 c 521 g 338 t
ORIGIN
1 ccctcggcgt ccgcgcgccc ccagcctggc ggacgagccc ggcggcggag atgggggcga
61 cgggggcggc ggagccgctg caatccgtgc tgtgggtgaa gcagcagcgc tgcgccgtga
121 gcctggagcc cgcgcgggct ctgctgcgct ggtggcggag cccggggccc ggagccggcg
181 cccccggcgc ggatgcctgc tctgtgcctg tatctgagat catcgccgtt gaggaaacag
241 acgttcacgg gaaacatcaa ggcagtggaa aatggcagaa aatggaaaag ccttacgctt
301 ttacagttca ctgtgtaaag agagcacgac ggcaccgctg gaagtgggcg caggtgactt
361 tctggtgtcc agaggagcag ctgtgtcact tgtggctgca gaccctgcgg gagatgctgg
421 agaagctgac gtccagacca aagcatttac tggtatttat caacccgttt ggaggaaaag
481 gacaaggcaa gcggatatat gaaagaaaag tggcaccact gttcacctta gcctccatca
541 ccactgacat catcgttact gaacatgcta atcaggccaa ggagactctg tatgagatta
601 acatagacaa atacgacggc atcgtctgtg tcggcggaga tggtatgttc agcgaggtgc
661 tgcacggtct gattgggagg acgcagagga gcgccggggt cgaccagaac cacccccggg
721 ctgtgctggt ccccagtagc ctccggattg gaatcattcc cgcagggtca acggactgcg
781 tgtgttactc caccgtgggc accagcgacg cagaaacctc ggcgctgcat atcgttgttg
841 gggactcgct ggccatggat gtgtcctcag tccaccacaa cagcacactc cttcgctact
901 ccgtgtccct gctgggctac ggcttctacg gggacatcat caaggacagt gagaagaaac
961 ggtggttggg tcttgccaga tacgactttt caggtttaaa gaccttcctc tcccaccact
1021 gctatgaagg gacagtgtcc ttcctccctg cacaacacac ggtgggatct ccaagggata
1081 ggaagccctg ccgggcagga tgctttgttt gcaggcaaag caagcagcag ctggaggagg
1141 agcagaagaa agcactgtat ggtttggaag ctgcggagga cgtggaggag tggcaagtcg
1201 tctgtgggaa gttcctggcc atcaatgcca caaacatgtc ctgtgcttgt cgccggagcc
1261 ccaggggcct ctccccggct gcccacttgg gagacgggtc ttctgacctc atcctcatcc
1321 ggaaatgctc caggttcaat tttctgagat ttctcatcag gcacaccaac cagcaggacc
1381 agtttgactt cacttttgtt gaagtttatc gcgtcaagaa attccagttt acgtcgaagc
1441 acatggagga tgaggacagc gacctcaagg agggggggaa gaagcgcttt gggcacattt
1501 gcagcagcca cccctcctgc tgctgcaccg tctccaacag ctcctggaac tgcgacgggg
1561 aggtcctgca cagccctgcc atcgaggtca gagtccactg ccagctggtt cgactctttg
1621 cacgaggaat tgaagagaat ccgaagccag actcacacag ctgagaagcc ggcgtcctgc
1681 tctcgaactg ggaaagtgtg aaaactatt
//