LOCUS BC126472 1534 bp mRNA linear HUM 23-OCT-2006
DEFINITION Homo sapiens tripartite motif-containing 49, mRNA (cDNA clone
MGC:161750 IMAGE:8992188), complete cds.
ACCESSION BC126472
VERSION BC126472.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1534)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1534)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (22-OCT-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 7 Row: P Column: 10.
FEATURES Location/Qualifiers
source 1..1534
/db_xref="H-InvDB:HIT000389064"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:161750 IMAGE:8992188"
/tissue_type="Pooled, cerebellum, kidney, placenta,
testis, lung, colon, liver, heart, thyroid, bladder,
uterus, PCR rescued clones"
/clone_lib="NIH_MGC_362"
/lab_host="DH10B"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: TACAACCC"
gene 1..1534
/gene="TRIM49"
/db_xref="GeneID:57093"
/db_xref="HGNC:HGNC:13431"
/db_xref="MIM:606124"
CDS 124..1482
/gene="TRIM49"
/codon_start=1
/product="tripartite motif-containing 49"
/protein_id="AAI26473.1"
/db_xref="GeneID:57093"
/db_xref="HGNC:HGNC:13431"
/db_xref="MIM:606124"
/translation="MNSGILQVFQGELICPLCMNYFIDPVTIDCGHSFCRPCFYLNWQ
DIPFLVQCSECTKSTEQINLKTNIHLKKMASLARKVSLWLFLSSEEQMCGTHRETKKI
FCEVDRSLLCLLCSSSQEHRYHRHRPIEWAAEEHREKLLQKMQSLWEKACENHRNLNV
ETTRTRCWKDYVNLRLEAIRAEYQKMPAFHHEEEKHNLEMLKKKGKEIFHRLHLSKAK
MAHRMEILRGMYEELNEMCHKPDVELLQAFGDILHRSESVLLHMPQPLNPELSAGPIT
GLRDRLNQFRVHITLHHEEANNDIFLYEILRSMCIGCDHQDVPYFTATPRSFLAWGVQ
TFTSGKYYWEVHVGDSWNWAFGVCNMYRKEKNQNEKIDGKAGLFLLGCVKNDIQCSLF
TTSPLMLQYIPKPTSRVGLFLDCEAKTVSFVDVNQSSLIYTIPNCSFSPPLRPIFCCI
HF"
BASE COUNT 448 a 325 c 353 g 408 t
ORIGIN
1 ctgcattttg gcgacctctg aaattcagta ctgcagtgaa tgagcttctg atcttgaggt
61 gaacttaaca aaattatttt tggaaaaatc gttgtgggaa ccattaaaag aactccagga
121 aacatgaatt ctggaatctt acaggtcttt cagggggaac tcatctgccc cctgtgcatg
181 aactacttca tagacccggt caccatagac tgtgggcaca gcttttgcag gccttgtttc
241 tacctcaact ggcaagacat cccatttctt gtccagtgct ctgaatgcac aaagtcaacc
301 gagcagataa acctcaaaac caacattcat ttgaagaaga tggcttctct tgccagaaaa
361 gtcagtctct ggctattcct gagctctgag gagcaaatgt gtggcactca cagggagaca
421 aagaagatat tctgtgaagt ggacaggagc ctgctctgtt tgctgtgctc cagctctcag
481 gagcaccggt atcacagaca ccgtcccatt gagtgggctg ctgaggaaca ccgggagaag
541 cttttacaga aaatgcagtc tttgtgggaa aaagcttgtg aaaatcacag aaacctgaat
601 gtggaaacca ccagaaccag atgctggaag gattatgtga atttaaggct agaagcaatt
661 agagctgagt atcagaagat gcctgcattt catcatgaag aagaaaaaca taatttggag
721 atgctgaaaa agaaggggaa agaaattttt catcgacttc atttaagtaa agccaaaatg
781 gctcatagga tggagatttt aagaggaatg tatgaggagc tgaacgaaat gtgccataaa
841 ccagatgtgg agctacttca ggcttttgga gacatattac acaggagtga gtccgtgctg
901 ctgcacatgc cccagcctct gaatccagag ctcagtgcag ggcccatcac tggactgagg
961 gacaggctca accaattccg agtgcatatt actctgcatc atgaagaagc caacaatgat
1021 atctttctgt atgaaatttt gagaagcatg tgtattggat gtgaccatca agatgtaccc
1081 tatttcactg caacacctag aagttttctt gcatggggtg ttcagacttt cacctcgggc
1141 aaatattact gggaggtcca tgtaggggac tcctggaatt gggcttttgg tgtctgtaat
1201 atgtatcgga aagagaagaa tcagaatgag aagatagatg gaaaggcggg actctttctt
1261 cttgggtgtg ttaagaatga cattcaatgc agtctcttta ccacctcccc acttatgctg
1321 caatatatcc caaaacctac cagccgagta ggattattcc tggattgtga ggctaagact
1381 gtgagctttg ttgatgttaa tcaaagctcc ctaatataca ccatccctaa ttgctctttc
1441 tcacctcctc tcaggcctat cttttgctgt attcacttct gaccagagac aaatcagaaa
1501 tgtgttcaca tgctgtggga acccctttat ccca
//