LOCUS BC126381 3248 bp mRNA linear HUM 23-OCT-2006
DEFINITION Homo sapiens WD repeat domain 78, mRNA (cDNA clone MGC:161659
IMAGE:8992097), complete cds.
ACCESSION BC126381
VERSION BC126381.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3248)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3248)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (22-OCT-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 7 Row: L Column: 15.
FEATURES Location/Qualifiers
source 1..3248
/db_xref="H-InvDB:HIT000388973"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:161659 IMAGE:8992097"
/tissue_type="Brain, cerebellum, PCR rescued clones"
/clone_lib="NIH_MGC_311"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: CCCTGGGC"
gene 1..3248
/gene="WDR78"
/gene_synonym="FLJ23129"
/gene_synonym="RP11-342H21.1"
/db_xref="GeneID:79819"
/db_xref="HGNC:HGNC:26252"
CDS 32..2578
/gene="WDR78"
/gene_synonym="FLJ23129"
/gene_synonym="RP11-342H21.1"
/codon_start=1
/product="WD repeat domain 78"
/protein_id="AAI26382.1"
/db_xref="GeneID:79819"
/db_xref="HGNC:HGNC:26252"
/translation="MTPGKHSGASARAANAGAWGYRDFRGGQKKGWWTTPQLVATMPV
SPAGSHKQQNFGLNNATQPKKSISFFATMKATSVKGYTGANQSRMAVSKTVLIPPELK
TVEKPNPNIKTTQVFDINGTDVTPRPLYHPDPLTGTAKPSKLLTSQEGSLGSEFISSY
SLYQNTINPSTLGQFTRSVLGSSTVSKSSVSASESIAEDLEEPSYKRERLTSFTDLQV
IRAAPEKIVTKEDLEKNIEIILTETETLRFFDLPTVMVSVESEEAEKVTQRNKNYEVL
CRNRLGNDLYVERMMQTFNGAPKNKDVQCDKIIMEDKGIMSTAWDLYDSYNAMELVSL
SVKQSVVESSSKANVLPKDQDQRLPGSTTEKNSETSSLMDIENVILAKIHEDEEDHSD
AILKSDKFHQDLFFMERVLMENIFQPKLAAYRQLPVLKEPEPEEPEDVLESAKHEEVE
EESKKEEEEEIHAEESTIPANLERLWSFSCDLTKGLNVSSLAWNKTNPDLLAVGYGHF
GFKEQKRGLACCWSIKNPMWPERIYQSPYGVTAVDFSIGAPNLLAVGYHNGTIAIYNV
RSNSNVPVLDSSESPQKHLGPVWQLQWIEQDRGTTGDGKREILVSISADGRISKWVIR
KGLDCYDLMRLKRTTAASNKKGGEKEKKDEALISRQAPGMCFAFHPKDTNIYLAGTEE
GHIHKCSCSYNEQYLDTYRGHKGPVYKVTWNPFCHDVFLSCSADWGVIIWQQENVKPS
LSFYPATSVVYDVAWSPKSSYIFAAANENRVEIWDLHISTLDPLIVNTANPGIKFTTI
LFAKQTDCLLVGDSDGQVSVYELRNMPTVLETGRGDIMDTLLGSKSNQSA"
BASE COUNT 1091 a 594 c 655 g 908 t
ORIGIN
1 ccgcttgttg agccagggct ccaccgtcgc catgacgccc ggcaaacatt ccggagcctc
61 ggcccgagcc gctaacgcag gagcttgggg gtacagggac ttcagaggcg gccaaaaaaa
121 ggggtggtgg accactcccc agctggtcgc caccatgcca gtctctccgg caggcagtca
181 caagcagcag aacttcgggt tgaacaatgc cacacaacca aagaagtcta ttagcttttt
241 tgctacaatg aaagcaactt cagtgaaagg atatactggt gcaaatcaaa gcagaatggc
301 tgtgtccaaa accgtgctta ttccacctga actgaaaact gtagaaaaac caaatcccaa
361 tataaagaca acacaggtat ttgacataaa tggaactgat gttactcccc gacctcttta
421 ccatccagat ccacttactg gtacagcaaa accaagtaaa ctcttgacat cacaagaagg
481 atcacttgga tcagaattta tatcttccta tagcctttat cagaatacaa taaatcctag
541 tacgttaggg cagtttacaa ggtcagtttt aggaagcagt acagtttcta agtcaagtgt
601 atcagcaagt gaatcaatag cagaagacct ggaagaacca tcctataaac gggaaagatt
661 gactagtttc acagatttgc aagttataag ggcagcacct gaaaaaattg taacaaaaga
721 agacctggag aagaatatag agataatact cacagagaca gaaacactga gattttttga
781 cttgcccaca gtcatggtct ctgtagaatc tgaagaagct gagaaagtaa ctcagagaaa
841 caagaattat gaagtccttt gtagaaacag attaggcaat gacctatatg ttgaaaggat
901 gatgcagact ttcaatggag caccaaagaa taaagatgtt caatgtgata aaatcataat
961 ggaagataaa ggcataatgt ccactgcctg ggatttgtat gattcttaca atgctatgga
1021 acttgtatct ttatcagtaa aacaatctgt ggttgagtca agtagtaaag caaatgtact
1081 tcctaaagat caggaccaaa gattgccagg gagcactaca gaaaaaaata gtgaaactag
1141 ttctctaatg gacatagaaa atgtaattct ggcaaaaatc catgaagatg aggaagacca
1201 ctcagatgca atattaaaat ctgacaaatt tcatcaggac ttatttttta tggaacgggt
1261 tctgatggaa aatatatttc agcccaaact tgcagcttat cgtcagcttc ctgttttaaa
1321 agaacctgaa cctgaagagc ctgaagatgt tttagaaagt gcaaaacatg aagaggtaga
1381 ggaagaatct aagaaggagg aggaagaaga aatacatgca gaagaatcaa caatacccgc
1441 caacttggaa cgactttggt ctttttcctg tgacttaacc aaaggcctca atgtgagcag
1501 ccttgcctgg aataaaacaa atccagatct tttggctgtt ggctatgggc actttggatt
1561 taaagagcaa aaaagaggac tggcttgctg ctggtcaata aagaatccca tgtggccaga
1621 acgtatttat cagagtccat atggagttac tgctgtggat ttttcaattg gagcacctaa
1681 ccttttagcc gttggctatc acaatggcac aattgcaatt tacaatgtac ggagcaacag
1741 taatgttcca gttctggata gtagtgaatc acctcaaaaa catttgggac ctgtatggca
1801 actacagtgg atagaacaag atcgaggaac aacaggagat ggcaaaagag aaatactagt
1861 ttctatatca gcagatggaa gaatctccaa atgggttata cgaaaaggac tagactgtta
1921 tgatttgatg cgattaaaga gaactacagc tgccagtaac aaaaaaggag gggaaaagga
1981 aaagaaagat gaagctttga tatctcgaca ggctcctgga atgtgttttg cttttcatcc
2041 caaggacaca aatatctatt tggctggcac tgaagaaggt catattcaca aatgttcttg
2101 ttcatataat gaacaatact tagataccta cagaggacat aagggtccag tgtataaagt
2161 gacatggaat ccattttgtc atgatgtatt tttaagctgt tctgcagatt ggggtgttat
2221 tatatggcaa caggagaatg tcaagccatc tttgagtttt tatccagcta cttctgttgt
2281 ttacgacgtt gcctggtctc caaaatcatc ctatatattt gcagctgcaa atgagaacag
2341 ggtggagatt tgggaccttc atatcagcac tttggaccct ctgattgtga atactgctaa
2401 ccctggaatc aagttcacaa ccattctctt tgccaaacaa acagattgcc ttctggtagg
2461 agacagtgat ggacaggttt ctgtgtatga actgagaaat atgcctactg ttttggaaac
2521 tggccgggga gatataatgg atactttgct tggatccaag tcaaaccaat cagcataatt
2581 catcattcct aatatttttc ttgtagttgt tttaaaaaag gaattaacat ccaatattct
2641 gtattacata ctgtacacca gattttgatt tcagaaaaca atatttgatg tataacttcc
2701 acttaattta aatttaataa acttttattt cagagatatt tgattagttt acaatctaag
2761 agttattctt aagagtttca gtggaatttt cttaattttt ctaaagatat tcctactctc
2821 ttgatcatat tctaagtaca tatgagtaca tgtacattct tatacaatgt ctaaatgggt
2881 tagaaaatta ttatacctat agaagcgaaa cttggaaatt aatagaatca cttaaaccaa
2941 aatctttata agacacaatt ctattgattt taaagcttct gctttccagg ctctgttttc
3001 cagagtttat aattacgtag tttttagtag atgaaaataa tggattcttg tacctaacat
3061 tttatcctct tagatctaag agccgaagct atagaacttt gttagactat ttggcaagca
3121 aaatatatga cagtaaatat cagaatttta tggtttgacc agcgcttatc acattcccaa
3181 ttcagtgaga aaaattcatc tgggacacaa cagggtactc ttctctgttt gcccagaatc
3241 agctctgg
//