LOCUS BC126266 3139 bp mRNA linear HUM 23-OCT-2006
DEFINITION Homo sapiens synaptonemal complex protein 1, mRNA (cDNA clone
MGC:161544 IMAGE:8991982), complete cds.
ACCESSION BC126266
VERSION BC126266.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3139)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3139)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (22-OCT-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 7 Row: G Column: 20.
FEATURES Location/Qualifiers
source 1..3139
/db_xref="H-InvDB:HIT000388858"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:161544 IMAGE:8991982"
/tissue_type="Testis, PCR rescued clones"
/clone_lib="NIH_MGC_374"
/lab_host="DH10B"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: CCTTGCTC"
gene 1..3139
/gene="SYCP1"
/gene_synonym="HOM-TES-14"
/gene_synonym="SCP1"
/db_xref="GeneID:6847"
/db_xref="HGNC:HGNC:11487"
/db_xref="MIM:602162"
CDS 118..3048
/gene="SYCP1"
/gene_synonym="HOM-TES-14"
/gene_synonym="SCP1"
/codon_start=1
/product="synaptonemal complex protein 1"
/protein_id="AAI26267.1"
/db_xref="GeneID:6847"
/db_xref="HGNC:HGNC:11487"
/db_xref="MIM:602162"
/translation="MEKQKPFALFVPPRSSSSQVSAVKPQTLGGDSTFFKSFNKCTED
DFEFPFAKTNLSKNGENIDSDPALQKVNFLPVLEQVGNSDCHYQEGLKDSDLENSEGL
SRVYSKLYKEAEKIKKWKVSTEAELRQKESKLQENRKIIEAQRKAIQELQFGNEKVSL
KLEEGIQENKDLIKENNATRHLCNLLKETCARSAEKTKKYEYEREETRQVYMDLNNNI
EKMITAFEELRVQAENSRLEMHFKLKEDYEKIQHLEQEYKKEINDKEKQVSLLLIQIT
EKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRS
VSTQKALEEDLQIATKTICQLTEEKETQMEESNKARAAHSFVVTEFETTVCSLEELLR
TEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKVLGEKETLLYEN
KQFEKIAEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTELEN
EKLKNTELTSHCNKLSLENKELTQETSDMTLELKNQQEDINNNKKQEERMLKQIENLQ
ETETQLRNELEYVREELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENKA
LKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEITDTYQKEIEDKKISEENLLEEV
EKAKVIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKSKEQ
EQSSLRASLEIELSNLKAELLSVKKQLEIEREEKEKLKREAKENTATLKEKKDKKTQT
FLLETPEIYWKLDSKAVPSQTVSRNFTSVDHGISKDKRDYLWTSAKNTLSTPLPKAYT
VKTPTKPKLQQRENLNIPIEESKKKRKMAFEFDINSDSSETTDLLSMVSEEETLKTLY
RNNNPPASHLCVKTPKKAPSSLTTPGSTLKFGAIRKMREDRWAVIAKMDRKKKLKEAE
KLFV"
BASE COUNT 1348 a 459 c 614 g 718 t
ORIGIN
1 cgggagccat tggttctttc tgttgccctc atagaccgta tgtagcagtt cgcgtgggca
61 cagaacccac ggtttcccgc tagttcttca aagatattta caaccgtaac agagaaaatg
121 gaaaagcaaa agccctttgc attgttcgta ccaccgagat caagcagcag tcaggtgtct
181 gcggtgaaac ctcagaccct gggaggcgat tccactttct tcaagagttt caacaaatgt
241 actgaagatg attttgagtt tccatttgca aagactaatc tctccaaaaa tggggaaaac
301 attgattcag atcctgcttt acaaaaagtt aatttcttgc ccgtgcttga gcaggttggt
361 aattctgact gtcactatca ggaaggacta aaagactctg atttggagaa ttcagaggga
421 ttgagcagag tgtattcaaa actgtataag gaggctgaaa agataaaaaa atggaaagta
481 agtacagaag ctgaactgag acagaaagaa agtaagttgc aagaaaacag aaagataatt
541 gaagcacagc gaaaagccat tcaggaactg caatttggaa atgaaaaagt aagtttgaaa
601 ttagaagaag gaatacaaga aaataaagat ttaataaaag agaataatgc cacaaggcat
661 ttatgtaatc tactcaaaga aacctgtgct agatctgcag aaaagacaaa gaaatatgaa
721 tatgaacggg aagaaaccag gcaagtttat atggatctaa ataataacat tgagaaaatg
781 ataacagctt ttgaggaact tcgtgtgcaa gctgagaatt ccagactgga aatgcatttt
841 aagttaaagg aagattatga aaaaatccaa caccttgaac aagaatacaa gaaggaaata
901 aatgacaagg aaaagcaggt atcactacta ttgatccaaa tcactgagaa agaaaataaa
961 atgaaagatt taacatttct gctagaggaa tccagagata aagttaatca attagaggaa
1021 aagacaaaat tacagagtga aaacttaaaa caatcaattg agaaacagca tcatttgact
1081 aaagaactag aagatattaa agtgtcatta caaagaagtg tgagtactca aaaggcttta
1141 gaggaagatt tacagatagc aacaaaaaca atttgtcagc taactgaaga aaaagaaact
1201 caaatggaag aatctaataa agctagagct gctcattcgt ttgtggttac tgaatttgaa
1261 actactgtct gcagcttgga agaattattg agaacagaac agcaaagatt ggaaaaaaat
1321 gaagatcaat tgaaaatact taccatggag cttcaaaaga aatcaagtga gctggaagag
1381 atgactaagc ttacaaataa caaagaagta gaacttgaag aattgaaaaa agtcttggga
1441 gaaaaggaaa cacttttata tgaaaataaa caatttgaga agattgctga agaattaaaa
1501 ggaacagaac aagaactaat tggtcttctc caagccagag agaaagaagt acatgatttg
1561 gaaatacagt taactgccat taccacaagt gaacagtatt attcaaaaga ggttaaagat
1621 ctaaaaactg agcttgaaaa cgagaagctt aagaatactg aattaacttc acactgcaac
1681 aagctttcac tagaaaacaa agagctcaca caggaaacaa gtgatatgac cctagaactc
1741 aagaatcagc aagaagatat taataataac aaaaagcaag aagaaaggat gttgaaacaa
1801 atagaaaatc ttcaagaaac agaaacccaa ttaagaaatg aactagaata tgtgagagaa
1861 gagctaaaac agaaaagaga tgaagttaaa tgtaaattgg acaagagtga agaaaattgt
1921 aacaatttaa ggaaacaagt tgaaaataaa aacaagtata ttgaagaact tcagcaggag
1981 aataaggcct tgaaaaaaaa aggtacagca gaaagcaagc aactgaatgt ttatgagata
2041 aaggtcaata aattagagtt agaactagaa agtgccaaac agaaatttgg agaaatcaca
2101 gacacctatc agaaagaaat tgaggacaaa aagatatcag aagaaaatct tttggaagag
2161 gttgagaaag caaaagtaat agctgatgaa gcagtaaaat tacagaaaga aattgataag
2221 cgatgtcaac ataaaatagc tgaaatggta gcacttatgg aaaaacataa gcaccaatat
2281 gataagatca ttgaagaaag agactcagaa ttaggacttt ataagagcaa agaacaagaa
2341 cagtcatcac tgagagcatc tttggagatt gaactatcca atctcaaagc tgaacttttg
2401 tctgttaaga agcaacttga aatagaaaga gaagagaagg aaaaactcaa aagagaggca
2461 aaagaaaaca cagctactct taaagaaaaa aaagacaaga aaacacaaac atttttattg
2521 gaaacacctg aaatttattg gaaattggat tctaaagcag ttccttcaca aactgtatct
2581 cgaaatttca catcagttga tcatggcata tccaaagata aaagagacta tctgtggaca
2641 tctgccaaaa atactttatc tacaccattg ccaaaggcat atacagtgaa gacaccaaca
2701 aaaccaaaac tacagcaaag agaaaacttg aatataccca ttgaagaaag taaaaaaaag
2761 agaaaaatgg cctttgaatt tgatattaat tcagatagtt cagaaactac tgatcttttg
2821 agcatggttt cagaagaaga gacattgaaa acactgtata ggaacaataa tccaccagct
2881 tctcatcttt gtgtcaaaac accaaaaaag gccccttcat ctctaacaac ccctggatct
2941 acactgaagt ttggagctat aagaaaaatg cgggaggacc gttgggctgt aattgctaaa
3001 atggatagaa aaaaaaaact aaaagaagct gaaaagttat ttgtttaatt tcagagaatc
3061 agtgtagtta aggagcctaa taacgtgaaa cttatagtta atattttgtt cttatttgcc
3121 agagccaaat tttatctgg
//