LOCUS BC126247 2414 bp mRNA linear HUM 23-OCT-2006
DEFINITION Homo sapiens interferon regulatory factor 8, mRNA (cDNA clone
MGC:161525 IMAGE:8991963), complete cds.
ACCESSION BC126247
VERSION BC126247.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2414)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2414)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (22-OCT-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 7 Row: G Column: 1.
FEATURES Location/Qualifiers
source 1..2414
/db_xref="H-InvDB:HIT000388839"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:161525 IMAGE:8991963"
/tissue_type="Brain, cerebellum, PCR rescued clones"
/clone_lib="NIH_MGC_310"
/note="Vector: pCR4-TOPO; Clone identification sequence
tag: AAGCGGCA"
gene 1..2414
/gene="IRF8"
/gene_synonym="H-ICSBP"
/gene_synonym="ICSBP"
/gene_synonym="IRF-8"
/db_xref="GeneID:3394"
/db_xref="HGNC:HGNC:5358"
/db_xref="MIM:601565"
CDS 53..1333
/gene="IRF8"
/gene_synonym="H-ICSBP"
/gene_synonym="ICSBP"
/gene_synonym="IRF-8"
/codon_start=1
/product="interferon regulatory factor 8"
/protein_id="AAI26248.1"
/db_xref="GeneID:3394"
/db_xref="HGNC:HGNC:5358"
/db_xref="MIM:601565"
/translation="MCDRNGGRRLRQWLIEQIDSSMYPGLIWENEEKSMFRIPWKHAG
KQDYNQEVDASIFKAWAVFKGKFKEGDKAEPATWKTRLRCALNKSPDFEEVTDRSQLD
ISEPYKVYRIVPEEEQKCKLGVATAGCVNEVTEMECGRSEIDELIKEPSVDDYMGMIK
RSPSPPEACRSQLLPDWWAQQPSTGVPLVTGYTTYDAHHSAFSQMVISFYYGGKLVGQ
ATTTCPEGCRLSLSQPGLPGTKLYGPEGLELVRFPPADAIPSERQRQVTRKLFGHLER
GVLLHSSRQGVFVKRLCQGRVFCSGNAVVCKGRPNKLERDEVVQVFDTSQFFRELQQF
YNSQGRLPDGRVVLCFGEEFPDMAPLRSKLILVQIEQLYVRQLAEEAGKSCGAGSVMQ
APEEPPPDQVFRMFPDICASHQRSFFRENQQITV"
BASE COUNT 560 a 565 c 665 g 624 t
ORIGIN
1 ggcagcaagc gtgggaacgc gggcggcgag acggcggcag gacggcggca ggatgtgtga
61 ccggaatggt ggtcggcggc ttcgacagtg gctgatcgag cagattgaca gtagcatgta
121 tccaggactg atttgggaga atgaggagaa gagcatgttc cggatccctt ggaaacacgc
181 tggcaagcaa gattataatc aggaagtgga tgcctccatt tttaaggcct gggcagtttt
241 taaagggaag tttaaagaag gggacaaagc tgaaccagcc acttggaaga cgaggttacg
301 ctgtgctttg aataagagcc cagattttga ggaagtgacg gaccggtccc aactggacat
361 ttccgagcca tacaaagttt accgaattgt tcctgaggaa gagcaaaaat gcaaactagg
421 cgtggcaact gctggctgcg tgaatgaagt tacagagatg gagtgcggtc gctctgaaat
481 cgacgagctg atcaaggagc cttctgtgga cgattacatg gggatgatca aaaggagccc
541 ttccccgccg gaggcctgtc ggagtcagct ccttccagac tggtgggcgc agcagcccag
601 cacaggcgtg ccgctggtga cggggtacac cacctacgac gcgcaccatt cagcattctc
661 ccagatggtg atcagcttct actatggggg caagctggtg ggccaggcca ccaccacctg
721 ccccgagggc tgccgcctgt ccctgagcca gcctgggctg cccggcacca agctgtatgg
781 gcccgagggc ctggagctgg tgcgcttccc gccggccgac gccatcccca gcgagcgaca
841 gaggcaggtg acgcggaagc tgttcgggca cctggagcgc ggggtgctgc tgcacagcag
901 ccggcagggc gtgttcgtca agcggctgtg ccagggccgc gtgttctgca gcggcaacgc
961 cgtggtgtgc aaaggcaggc ccaacaagct ggagcgtgat gaggtggtcc aggtcttcga
1021 caccagccag ttcttccgag agctgcagca gttctataac agccagggcc ggcttcctga
1081 cggcagggtg gtgctgtgct ttggggaaga gtttccggat atggccccct tgcgctccaa
1141 actcattctc gtgcagattg agcagctgta tgtccggcaa ctggcagaag aggctgggaa
1201 gagctgtgga gccggctctg tgatgcaggc ccccgaggag ccgccgccag accaggtctt
1261 ccggatgttt ccagatattt gtgcctcaca ccagagatca tttttcagag aaaaccaaca
1321 gatcaccgtc taagtgcgtc gcttgggcgc cccaccccgt ctgcgtcctg catccatctc
1381 cctgttacag tggcccgcat catgattaaa gaatgtggat ccctctgtct ggggtgggat
1441 gccttacttt gcacttaatt taataagggc attctcggag gagtagacgt ttaatacgaa
1501 gtggcggcat agccctgccg agatgtcggt gatggcctgg atgctgtaac cacaacctgt
1561 ggctaaaaat tttattttct atcctttacc cgtcattatc attagttgct atgattcttt
1621 ctgcattttc ggttaactat catttccaaa gacttgtcat tcagtaatat tagcagatag
1681 ctgcttcgat aaaggaattt ggagtttaaa aatcaacttg tgaaaacaag gttgtttttg
1741 tctttatctt ttgttagagt tatagattta tgatttcata ggcttgattc tatgtgaaat
1801 atctttttac ttttatgcat tttaataaga tttaaaaata tttagattaa agcccccttt
1861 aatgagtaca agaaaaactc ttggcttgtt agaagaaagt atattctttc tagaatttgg
1921 tgcaggaata tgtgttcata tccaggcaaa cgggtgtgtt tttatcttca gacaatgaaa
1981 ccttctcctc tggggctttg ttgccaggaa gattagaact aaatttattt ttttcatttc
2041 tgtcatgaaa tcattccaga tacctctttt cttctttcca aatggttttc acatgtgttt
2101 gaaatatttg tactttgaat tgtcggattt tccatgtcct cctttctcct ttgtgcccag
2161 cctgagtcag caccatcccg cattcagaac ctcccagtga aagggcagcc ttcattttga
2221 gaaggtggaa ggtgttaggg tttgggagac agctcatcca atctcccaag tctcatggtg
2281 gatttgtgac tgtgagagtt tccggtttaa aatctgaaaa gccagatatg cctgtttcct
2341 tttcccagca ccatgcctgt ggaggggaca gtcagaccca gaggtccttt acgtgtggat
2401 ggagttcaca ggcg
//