LOCUS BC126191 2201 bp mRNA linear HUM 23-OCT-2006
DEFINITION Homo sapiens SET and MYND domain containing 1, mRNA (cDNA clone
MGC:161469 IMAGE:8991907), complete cds.
ACCESSION BC126191
VERSION BC126191.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2201)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2201)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (22-OCT-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 7 Row: D Column: 17.
FEATURES Location/Qualifiers
source 1..2201
/db_xref="H-InvDB:HIT000388783"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:161469 IMAGE:8991907"
/tissue_type="Pooled, cerebellum, kidney, placenta,
testis, lung, colon, liver, heart, thyroid, bladder,
uterus, PCR rescued clones"
/clone_lib="NIH_MGC_362"
/lab_host="DH10B"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: ATTCGGGT"
gene 1..2201
/gene="SMYD1"
/gene_synonym="BOP"
/gene_synonym="ZMYND18"
/db_xref="GeneID:150572"
/db_xref="HGNC:HGNC:20986"
/db_xref="MIM:606846"
CDS 86..1558
/gene="SMYD1"
/gene_synonym="BOP"
/gene_synonym="ZMYND18"
/codon_start=1
/product="SET and MYND domain containing 1"
/protein_id="AAI26192.1"
/db_xref="GeneID:150572"
/db_xref="HGNC:HGNC:20986"
/db_xref="MIM:606846"
/translation="MTIGRMENVEVFTAEGKGRGLKATKEFWAADIIFAERAYSAVVF
DSLVNFVCHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWLNHKNECSAIKRYGKVPNE
NIRLAARIMWRVEREGTGLTEGCLVSVDDLQNHVEHFGEEEQKDLRVDVDTFLQYWPP
QSQQFSMQYISHIFGVINCNGFTLSDQRGLQAVGVGIFPNLGLVNHDCWPNCTVIFNN
GNHEAVKSMFHTQMRIELRALGKISEGEELTVSYIDFLNVSEERKRQLKKQYYFDCTC
EHCQKKLKDDLFLGVKDNPKPSQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRE
CLEKQEPVFADTNIYMLRMLSIVSEVLSYLQAFEEASFYARRMVDGYMKLYHPNNAQL
GMAVMRAGLTNWHAGNIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRVQTEMELRM
FRQNEFMYYKMREAALNNQPMQVMAEPSNEPSPALFHKKQ"
BASE COUNT 556 a 492 c 662 g 491 t
ORIGIN
1 gggatgctga aggtgctgaa atagcaatga caagagactt ggctcagtgt taaataactg
61 ccgcgctggc ctgacagtct ctgagatgac aatagggaga atggagaacg tggaggtctt
121 caccgctgag ggcaaaggaa ggggtctgaa ggccaccaag gagttctggg ctgcagatat
181 catctttgct gagcgggctt attccgcagt ggtttttgac agccttgtta attttgtgtg
241 ccacacctgc ttcaagaggc aggagaagct ccatcgctgt gggcagtgca agtttgccca
301 ttactgcgac cgcacctgcc agaaggatgc ttggctgaac cacaagaatg aatgttcggc
361 catcaagaga tatgggaagg tgcccaatga gaacatcagg ctggcggcgc gcatcatgtg
421 gagggtggag agagaaggca ccgggctcac ggagggctgc ctggtgtccg tggacgactt
481 gcagaaccac gtggagcact ttggggagga ggagcagaag gacctgcggg tggacgtgga
541 cacattcttg cagtactggc cgccgcagag ccagcagttc agcatgcagt acatctcgca
601 catcttcgga gtgattaact gcaacggttt tactctcagt gatcagagag gcctgcaggc
661 cgtgggcgta ggcatcttcc ccaacctggg cctggtgaac catgactgtt ggcccaactg
721 tactgtcata tttaacaatg gcaatcatga ggcagtgaaa tccatgtttc atacccagat
781 gagaattgag ctccgggccc taggcaagat ctcagaagga gaggagctga ctgtgtccta
841 tattgacttc ctcaacgtta gtgaagaacg caagaggcag ctgaagaagc agtactactt
901 tgactgcaca tgtgaacact gccagaaaaa actgaaggat gacctcttcc tgggggtgaa
961 agacaacccc aagccctctc aggaagtggt gaaggagatg atacaattct ccaaggatac
1021 attggaaaag atagacaagg ctcgttccga gggtttgtat catgaggttg tgaaattatg
1081 ccgggagtgc ctggagaagc aggagccagt gtttgctgac accaacatct acatgctgcg
1141 gatgctgagc attgtttcgg aggtcctttc ctacctccag gcctttgagg aggcctcgtt
1201 ctatgccagg aggatggtgg acggctatat gaagctctac caccccaaca atgcccaact
1261 gggcatggcc gtgatgcggg cagggctgac caactggcat gctggtaaca ttgaggtggg
1321 gcacgggatg atctgcaaag cctatgccat tctcctggtg acacacggac cctcccaccc
1381 catcactaag gacttagagg ccatgcgggt gcagacggag atggagctac gcatgttccg
1441 ccagaacgaa ttcatgtact acaagatgcg cgaggctgcc ctgaacaacc agcccatgca
1501 ggtcatggcc gagcccagca atgagccatc cccagctctg ttccacaaga agcaatgagg
1561 actgcccagt ggaggagggg cgatgtggct ggggagctag ggagagactc tggaggtggt
1621 gggtctctgg ggagacccct aatgaggaag ttgaggtaat gcttaacatt gttgctgtga
1681 gaatttactg ccctgtgttt cccagagcca ttttggctca attcaagtct attcaattca
1741 agttaactct agcccagccc agatcaactc ctcctacaaa tattattgga tgataggccc
1801 tagaacccaa taaaggagct ccaaatgtcg ttgggtgggg aagcaaaatg tagagaaaca
1861 tttaaagcac actgtaataa taaatgcaat tataaactat atggaggagg gtgcagagga
1921 gggaatgtgt ctggtgtgtg atgtgtgtgt gtgcagtggg ggtatcacag agagtatgac
1981 atctgagttg agggtagcag gtgcctggag tctcaggtgg ctgctcaccc atctgtgcag
2041 gtgtctctgg ggctgctggt ctcacctgtg gtctgcagta gacacaattg gctgagcagg
2101 atatgtgata ctgtgtggtt ggtgtggagt tttgaagaag gggctgtgtt tgggccacgt
2161 aggctctact cagagacctg aaaccacttc agaatggcgc a
//