LOCUS BC126124 2904 bp mRNA linear HUM 23-OCT-2006
DEFINITION Homo sapiens heat shock 70kDa protein 4, mRNA (cDNA clone
MGC:161402 IMAGE:8991840), complete cds.
ACCESSION BC126124
VERSION BC126124.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2904)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2904)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (22-OCT-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 7 Row: A Column: 22.
FEATURES Location/Qualifiers
source 1..2904
/db_xref="H-InvDB:HIT000388716"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:161402 IMAGE:8991840"
/tissue_type="Brain, cerebellum, PCR rescued clones"
/clone_lib="NIH_MGC_311"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: CATGTAGG"
gene 1..2904
/gene="HSPA4"
/gene_synonym="APG-2"
/gene_synonym="HS24/P52"
/gene_synonym="hsp70"
/gene_synonym="hsp70RY"
/gene_synonym="RY"
/db_xref="GeneID:3308"
/db_xref="HGNC:HGNC:5237"
/db_xref="MIM:601113"
CDS 243..2765
/gene="HSPA4"
/gene_synonym="APG-2"
/gene_synonym="HS24/P52"
/gene_synonym="hsp70"
/gene_synonym="hsp70RY"
/gene_synonym="RY"
/codon_start=1
/product="heat shock 70kDa protein 4"
/protein_id="AAI26125.1"
/db_xref="GeneID:3308"
/db_xref="HGNC:HGNC:5237"
/db_xref="MIM:601113"
/translation="MSVVGIDLGFQSCYVAVARAGGIETIANEYSDRCTPACISFGPK
NRSIGAAAKSQVISNAKNTVQGFKRFHGRAFSDPFVEAEKSNLAYDIVQLPTGLTGIK
VTYMEEERNFTTEQVTAMLLSKLKETAESVLKKPVVDCVVSVPCFYTDAERRSVMDAT
QIAGLNCLRLMNETTAVALAYGIYKQDLPALEEKPRNVVFVDMGHSAYQVSVCAFNRG
KLKVLATAFDTTLGGRKFDEVLVNHFCEEFGKKYKLDIKSKIRALLRLSQECEKLKKL
MSANASDLPLSIECFMNDVDVSGTMNRGKFLEMCNDLLARVEPPLRSVLEQTKLKKED
IYAVEIVGGATRIPAVKEKISKFFGKELSTTLNADEAVTRGCALQCAILSPAFKVREF
SITDVVPYPISLRWNSPAEEGSSDCEVFSKNHAAPFSKVLTFYRKEPFTLEAYYSSPQ
DLPYPDPAIAQFSVQKVTPQSDGSSSKVKVKVRVNVHGIFSVSSASLVEVHKSEENEE
PMETDQNAKEEEKMQVDQEEPHVEEQQQQTPAENKAESEEMETSQAGSKDKKMDQPPQ
AKKAKVKTSTVDLPIENQLLWQIDREMLNLYIENEGKMIMQDKLEKERNDAKNAVEEY
VYEMRDKLSGEYEKFVSEDDRNSFTLKLEDTENWLYEDGEDQPKQVYVDKLAELKNLG
QPIKIRFQESEERPKLFEELGKQIQQYMKIISSFKNKEDQYDHLDAADMTKVEKSTNE
AMEWMNNKLNLQNKQSLTMDPVVKSKEIEAKIKELTSTCSPIISKPKPKVEPPKEEQK
NAEQNGPVDGQGDNPGPQAAEQGTDTAVPSDSDKKLPEMDID"
BASE COUNT 906 a 570 c 710 g 718 t
ORIGIN
1 tttcgagatc ttctccgccc ccgctaccgg cgcctcctct gcggccactg agccggagcc
61 ggcctgagca gcgctctcgg ttgcagtacc cactggaagg acttaggcgc tcgcgtggac
121 accgcaagcc cctcagtagc ctcggcccaa gaggcctgct ttccactcgc tagccccgcc
181 gggggtccgt gtcctgtctc ggtggccgga cccgggcccg agcccgagca gtagccggcg
241 ccatgtcggt ggtgggcata gacctgggct tccagagctg ctacgtcgct gtggcccgcg
301 ccggcggcat cgagactatc gctaatgagt atagcgaccg ctgcacgccg gcttgcattt
361 cttttggtcc taagaatcgt tcaattggag cagcagctaa aagccaggta atttctaatg
421 caaagaacac agtccaagga tttaaaagat tccatggccg agcattctct gatccatttg
481 tggaggcaga aaaatctaac cttgcatatg atattgtgca gttgcctaca ggattaacag
541 gtataaaggt gacatatatg gaggaagagc gaaattttac cactgagcaa gtgactgcca
601 tgcttttgtc caaactgaag gagacagccg aaagtgttct taagaagcct gtagttgact
661 gtgttgtttc ggttccttgt ttctatactg atgcagaaag acgatcagtg atggatgcaa
721 cacagattgc tggtcttaat tgcttgcgat taatgaatga aaccactgca gttgctcttg
781 catatggaat ctataagcag gatcttcctg ccttagaaga gaaaccaaga aatgtagttt
841 ttgtagacat gggccactct gcttatcaag tttctgtatg tgcatttaat agaggaaaac
901 tgaaagttct ggccactgca tttgacacga cattgggagg tagaaaattt gatgaagtgt
961 tagtaaatca cttctgtgaa gaatttggga agaaatacaa gctagacatt aagtccaaaa
1021 tccgtgcatt attacgactc tctcaggagt gtgagaaact caagaaattg atgagtgcaa
1081 atgcttcaga tctccctttg agcattgaat gttttatgaa tgatgttgat gtatctggaa
1141 ctatgaatag aggcaaattt ctggagatgt gcaatgatct cttagctaga gtggagccac
1201 cacttcgtag tgttttggaa caaaccaagt taaagaaaga agatatttat gcagtggaga
1261 tagttggtgg tgctacacga atccctgcgg taaaagagaa gatcagcaaa tttttcggta
1321 aagaacttag tacaacatta aatgctgatg aagctgtcac tcgaggctgt gcattgcagt
1381 gtgccatctt atcgcctgct ttcaaagtca gagaattttc tatcactgat gtagtaccat
1441 atccaatatc tctgagatgg aattctccag ctgaagaagg gtcaagtgac tgtgaagtct
1501 tttccaaaaa tcatgctgct cctttctcta aagttcttac attttataga aaggaacctt
1561 tcactcttga ggcctactac agctctcctc aggatttgcc ctatccagat cctgctatag
1621 ctcagttttc agttcagaaa gtcactcctc agtctgatgg ctccagttca aaagtgaaag
1681 tcaaagttcg agtaaatgtc catggcattt tcagtgtgtc cagtgcatct ttagtggagg
1741 ttcacaagtc tgaggaaaat gaggagccaa tggaaacaga tcagaatgca aaggaggaag
1801 agaagatgca agtggaccag gaggaaccac atgttgaaga gcaacagcag cagacaccag
1861 cagaaaataa ggcagagtct gaagaaatgg agacctctca agctggatcc aaggataaaa
1921 agatggacca accaccccaa gccaagaagg caaaagtgaa gaccagtact gtggacctgc
1981 caatcgagaa tcagctatta tggcagatag acagagagat gctcaacttg tacattgaaa
2041 atgagggtaa gatgatcatg caggataaac tggagaagga gcggaatgat gctaagaacg
2101 cagtggagga atatgtgtat gaaatgagag acaagcttag tggtgaatat gagaagtttg
2161 tgagtgaaga tgatcgtaac agttttactt tgaaactgga agatactgaa aattggttgt
2221 atgaggatgg agaagaccag ccaaagcaag tttatgttga taagttggct gaattaaaaa
2281 atctaggtca acctattaag atacgtttcc aggaatctga agaacgacca aaattatttg
2341 aagaactagg gaaacagatc caacagtata tgaaaataat cagctctttc aaaaacaagg
2401 aggaccagta tgatcatttg gatgctgctg acatgacaaa ggtagaaaaa agcacaaatg
2461 aagcaatgga gtggatgaat aacaagctaa atctgcagaa caagcagagt ttgaccatgg
2521 atccagttgt caagtcaaaa gagattgaag ctaaaattaa ggagctgaca agtacttgta
2581 gccctataat ttcaaagccc aaacccaaag tggaacctcc aaaagaggaa caaaaaaatg
2641 cagagcagaa tggaccagtg gatggacaag gagacaaccc aggcccccag gctgctgagc
2701 agggtacaga cacagctgtg ccttcggatt cagacaagaa gcttcctgaa atggacattg
2761 attgattcca acacttgttt ctattaaaac agactattat aaagctttaa gttgtcaact
2821 ttgttctaaa tatcaactag cgcaagtgaa tactgaagat ttcttagtca gtttttaggg
2881 gattttcggg gaggggaaat aggt
//