LOCUS BC126110 3689 bp mRNA linear HUM 23-OCT-2006
DEFINITION Homo sapiens TSR1, 20S rRNA accumulation, homolog (S. cerevisiae),
mRNA (cDNA clone MGC:161388 IMAGE:8991826), complete cds.
ACCESSION BC126110
VERSION BC126110.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3689)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3689)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (22-OCT-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 7 Row: A Column: 8.
FEATURES Location/Qualifiers
source 1..3689
/db_xref="H-InvDB:HIT000388702"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:161388 IMAGE:8991826"
/tissue_type="Brain, cerebellum, PCR rescued clones"
/clone_lib="NIH_MGC_311"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: CTATAATC"
gene 1..3689
/gene="TSR1"
/gene_synonym="FLJ10534"
/gene_synonym="KIAA1401"
/db_xref="GeneID:55720"
/db_xref="HGNC:HGNC:25542"
CDS 506..2920
/gene="TSR1"
/gene_synonym="FLJ10534"
/gene_synonym="KIAA1401"
/codon_start=1
/product="TSR1, 20S rRNA accumulation, homolog (S.
cerevisiae)"
/protein_id="AAI26111.1"
/db_xref="GeneID:55720"
/db_xref="HGNC:HGNC:25542"
/translation="MAAHRPGPLKQQNKAHKGGRHRGRGSAQRDGKGRLALKTLSKKV
RKELSRVDQRHRASQLRKQKKEAVLAEKRQLGGKDGPPHQVLVVPLHSRISLPEAMQL
LQDRDTGTVHLNELGNTQNFMLLCPRLKHRWFFTSARPGDLHVVLDMAKVADTILFLL
DPLEGWDSTGDYCLSCLFAQGLPTYTLAVQGISGLPLKKQIDTRKKLSKAVEKRFPHD
KLLLLDTQQEAGMLLRQLANQKQQHLAFRDRRAYLFAHAVDFVPSEENNLVGTLKISG
YVRGQTLNVNRLLHIVGYGDFQMKQIDAPGDPFPLNPRGIKPQKDPDMAMEICATDAV
DDMEEGLKVLMKADPGRQESLQAEVIPDPMEGEQTWPTEEELSEAKDFLKESSKVVKK
VPKGTSSYQAEWILDGGSQSGGEGDEYEYDDMEHEDFMEEESQDESSEEEEEYETMTI
GESVHDDLYDKKVDEEAEAKMLEKYKQERLEEMFPDEVDTPRDVAARIRFQKYRGLKS
FRTSPWDPKENLPQDYARIFQFQNFTNTRKSIFKEVEEKEVEGAEVGWYVTLHVSEVP
VSVVECFRQGTPLIAFSLLPHEQKMSVLNMVVRRDPGNTEPVKAKEELIFHCGFRRFR
ASPLFSQHTAADKHKLQRFLTADMALVATVYAPITFPPASVLLFKQKSNGMHSLIATG
HLMSVDPDRMVIKRVVLSGHPFKIFTKMAVVRYMFFNREDVLWFKPVELRTKWGRRGH
IKEPLGTHGHMKCSFDGKLKSQDTVLMNLYKRVFPKWTYDPYVPEPVPWLKSEISSTV
PQGGME"
BASE COUNT 1055 a 825 c 939 g 870 t
ORIGIN
1 accgggcaag gtgagagaag tgtcttccac gcgattccca agcctcgcta gggaatcgag
61 ggagaagaaa ggttgctcag agtgataaag aacatgccgt tgcaaacgga agagcaacgt
121 gcccgaatct aggtgacagg aagggcttag gccttttcgg cacgaatgga gccttccagt
181 caacatgctt ctacgtgatg cagctttata gcgcaaaaaa atgacaatgc aaggggtaca
241 aacagccctg ctagaccaac agcccgagcc tcgacagtct acatccggcg ccttcaagcc
301 cccaaccaca cactgcgaag tgggaaaagt tcccagcgcg gcttggcgaa cccgctaaca
361 cggcgctctc acgagctgct ggaaaagacc ttcgcgagag ggcgcaggga gtcccgctcc
421 ctggagggcc cgcccccttg gaggggaccg gaagcgcttg tcctggcccg gaagcagtgc
481 tgactccgta cacgcgcgct gcggcatggc ggcccaccgc cccggcccgc tcaagcagca
541 gaataaagct cataaaggcg gacggcatcg gggtcgggga tctgcacagc gggacggcaa
601 gggccgtctg gcactgaaaa ccctaagcaa gaaggtgaga aaagaactca gcagagtcga
661 ccagaggcat cgcgccagcc agctccgaaa gcagaagaag gaggcggttc tggcagagaa
721 gagacagctg ggtggcaagg atggccctcc tcatcaggta ctggtggtgc ccctgcacag
781 cagaatttcc ctgccagagg ccatgcagct gcttcaagat agggacactg gaacagtaca
841 cttgaatgaa ttgggaaaca cccagaactt tatgctgctg tgcccccgct tgaaacatcg
901 gtggtttttc acctcagcaa ggccagggga tctgcacgtt gtgttagaca tggctaaagt
961 agctgatacc atcctgttcc tccttgatcc actagaaggc tgggacagca ccggtgatta
1021 ctgtctttcc tgcctctttg ctcagggcct tccgacctat acactagctg tccaggggat
1081 ttctggcctc ccactgaaga aacaaataga taccaggaag aagctaagta aagcagtgga
1141 gaagcgcttt ccgcatgaca aactcctctt gttagacact caacaggagg cagggatgct
1201 gcttaggcag ttggctaacc agaagcaaca gcatcttgct tttcgagatc ggcgggccta
1261 cctatttgcc catgctgttg attttgttcc tagtgaagag aataacttgg tgggcacctt
1321 gaaaatttca ggctatgttc gagggcagac tctgaatgtc aataggttgc tgcatatcgt
1381 tggatatggt gatttccaga tgaaacagat agatgccccc ggagaccctt tccctttaaa
1441 tcctagagga attaaacccc aaaaggaccc agacatggca atggagattt gtgctacgga
1501 tgctgtagat gatatggaag aaggtcttaa agtcctaatg aaggcagacc ctggtagaca
1561 ggaatccttg caagcagagg ttatcccaga tccaatggag ggagagcaaa cctggcccac
1621 tgaggaggag ctgagcgagg caaaggattt cttgaaggaa agttctaagg tggtaaagaa
1681 ggtccccaaa ggaacatcca gttaccaagc tgaatggatt ttggatggtg gcagccaaag
1741 tggtggggaa ggagatgaat atgaatatga tgatatggaa catgaggatt ttatggagga
1801 ggaatctcag gatgagagta gtgaagaaga ggaagaatat gaaactatga ctattgggga
1861 gtctgtgcat gatgatctgt atgataagaa agtagatgaa gaagctgagg caaaaatgtt
1921 ggaaaaatat aaacaagaaa gactggaaga gatgtttcca gatgaagtgg acacgccccg
1981 tgatgtggct gctcgaattc gatttcagaa atacagaggc cttaagagct tccggacatc
2041 tccatgggat cctaaggaaa accttcctca agattatgct cgaatatttc agtttcagaa
2101 ctttactaac actaggaaaa gcatctttaa agaggttgaa gaaaaagagg ttgaaggagc
2161 tgaggttggc tggtatgtca cacttcatgt ctctgaagtc cccgtctcag tggtcgagtg
2221 cttcaggcaa ggaacaccct tgattgcatt ttctttacta cctcatgaac agaagatgtc
2281 agtattgaat atggtggtga ggcgtgaccc tggcaacact gaacctgtga aagccaagga
2341 agagctcata tttcactgtg gattcaggcg cttccgagcc tcacctttat tctctcagca
2401 cactgcagcg gacaaacata aattgcagag attcctgact gctgacatgg ccctggtggc
2461 gacagtctat gcgccaatca cttttcctcc tgcatctgtg ctgcttttca agcaaaaaag
2521 caatggaatg cacagcctca ttgctacagg ccatcttatg tcagtagatc cagacagaat
2581 ggtcatcaag agagttgttc tgagtggtca tcctttcaaa atttttacta agatggcagt
2641 agtacgttac atgttcttca acagagagga tgtgctgtgg tttaaaccag tggaactgag
2701 aacgaagtgg ggccggagag gacatatcaa ggaaccttta ggtacccatg gccacatgaa
2761 atgcagcttt gatgggaagc taaaatctca agacacagta ctgatgaacc tgtataaacg
2821 agtcttcccc aaatggactt atgatccata tgtaccagaa ccagtaccct ggctgaaaag
2881 tgagatttct tcaacagtgc ctcaaggggg catggagtaa tggattcaaa gagattctgt
2941 cttaccggtg ccagtcagta ctccagggat gggaggcaca agttgtgatt gggcaaagtt
3001 tattttctat gtcagcctgt cagtccactg ccccattttg caagactttt tttttagcct
3061 tgacaaaatg tctcagttaa gtataaaagt ttttccacta cttagtccaa aaaaaaacta
3121 ttaaatctta atgaaatagc cactctccat taagaatctg ataactaaga gttgacaata
3181 ctaggaaaca aaatgtcttc agtatctaaa gacactgaat tcccaccatt tccttttctg
3241 taaattaaac agaaacagac tgataagaag ctggcctttc agcctgcttc acccaagtta
3301 tggaggaggt taagtctaca tttccaccac tgagcacaat acaaatgttc tttacttctg
3361 gggaaacagt ttgaaaatgt tgagacagca cagcagccac tccaacacca gctgtaggtt
3421 caatgagtag tttcatcctc tcccacacca gctgggttgc acactgttga tatggaaggg
3481 agtaggaatt agtgaaaggg gagtctagtt ggtttaccta taaagttcag atgagaatac
3541 gtgtccagtt tgaatttttt tatcactgtg tacacacgct tcccaaagct tttctttaat
3601 tctgactctg cttctgtcaa gagggttgtc attaatacat ctagggtacc ctcccatgtc
3661 atgaagttac ctagtcaggt tcccgtggg
//