LOCUS BC125109 2755 bp mRNA linear HUM 04-OCT-2006
DEFINITION Homo sapiens Vac14 homolog (S. cerevisiae), mRNA (cDNA clone
MGC:149816 IMAGE:40118777), complete cds.
ACCESSION BC125109
VERSION BC125109.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2755)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2755)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-OCT-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 27 Row: n Column: 4.
FEATURES Location/Qualifiers
source 1..2755
/db_xref="H-InvDB:HIT000388562"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:149816 IMAGE:40118777"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_283"
/note="Vector: pCR-Blunt II-TOPO with reversed insert;
Clone identification sequence tag: TACAATTT sequenced from
the forward primer"
gene 1..2755
/gene="VAC14"
/gene_synonym="ArPIKfyve"
/gene_synonym="FLJ10305"
/gene_synonym="TRX"
/db_xref="GeneID:55697"
/db_xref="HGNC:HGNC:25507"
/db_xref="MIM:604632"
CDS 191..2539
/gene="VAC14"
/gene_synonym="ArPIKfyve"
/gene_synonym="FLJ10305"
/gene_synonym="TRX"
/codon_start=1
/product="Vac14 homolog (S. cerevisiae)"
/protein_id="AAI25110.1"
/db_xref="GeneID:55697"
/db_xref="HGNC:HGNC:25507"
/db_xref="MIM:604632"
/translation="MNPEKDFAPLTPNIVRALNDKLYEKRKVAALEIEKLVREFVAQN
NTVQIKHVIQTLSQEFALSQHPHSRKGGLIGLAACSIALGKDSGLYLKELIEPVLTCF
NDADSRLRYYACEALYNIVKVARGAVLPHFNVLFDGLSKLAADPDPNVKSGSELLDRL
LKDIVTESNKFDLVSFIPLLRERIYSNNQYARQFIISWILVLESVPDINLLDYLPEIL
DGLFQILGDNGKEIRKMCEVVLGEFLKEIKKNPSSVKFAEMANILVIHCQTTDDLIQL
TAMCWMREFIQLAGRVMLPYSSGILTAVLPCLAYDDRKKSIKEVANVCNQSLMKLVTP
EDDELDELRPGQRQAEPTPDDALPKQEGTASGGPDGSCDSSFSSGISVFTAASTERAP
VTLHLDGIVQVLNCHLSDTAIGMMTRIAVLKWLYHLYIKTPRKMFRHTDSLFPILLQT
LSDESDEVILKDLEVLAEIASSPAGQTDDPGPLDGPDLQASHSELQVPTPGRAGLLNT
SGTKGLECSPSTPTMNSYFYKFMINLLKRFSSERKLLEVRGPFIIRQLCLLLNAENIF
HSMADILLREEDLKFASTMVHALNTILLTSTELFQLRNQLKDLKTLESQNLFCCLYRS
WCHNPVTTVSLCFLTQNYRHAYDLIQKFGDLEVTVDFLAEVDKLVQLIECPIFTYLRL
QLLDVKNNPYLIKALYGLLMLLPQSSAFQLLSHRLQCVPNPELLQTEDSLKAAPKSQK
ADSPSIDYAELLQHFEKVQNKHLEVRHQRSGRGDHLDRRVVL"
BASE COUNT 597 a 869 c 773 g 516 t
ORIGIN
1 ggtcaggtgt gctggagcgg ggtccgggcc cgggttccag ggcgaggcgg cggagcgtgg
61 caggcaagcc tagagcggcg tggtccatgc gccggcgccg ggggcagagc ggagccgcag
121 actcccctgg ccccggcgcg gccccggcag ccgcgggcta aggagtcgcg aggttccccc
181 agctgccacc atgaaccccg agaaggattt cgcgccgctc acgcctaaca tcgtgcgcgc
241 cctcaatgac aagctgtacg aaaagcggaa ggtggcagcg ctggagatcg agaagctggt
301 ccgggagttc gtggcccaga acaataccgt gcaaatcaag catgtgatcc agaccctgtc
361 ccaggagttt gccctgtctc agcaccccca cagccggaaa gggggcctca tcggcctggc
421 cgcctgctcc atcgcactgg gcaaggactc agggctctac ctgaaggagc tgatcgagcc
481 agtgctgacc tgcttcaatg atgcagacag caggctgcgc tactatgcct gcgaggccct
541 ctacaacatc gtcaaggtgg cccggggcgc tgtgctgccc cacttcaacg tgctctttga
601 cgggctgagc aagctggcag ccgacccaga ccccaatgtg aaaagcggat ctgagctcct
661 agaccgcctt ttaaaggaca ttgtgactga gagcaacaag tttgacctgg tgagcttcat
721 ccccttgttg cgagagagga tttactccaa caaccagtat gcccggcagt tcatcatctc
781 ctggatcctg gttctggagt cggtgccaga cattaacctg ctggattacc tgccggagat
841 cctggatgga ctcttccaga tcctgggtga caatggcaaa gagattcgca aaatgtgtga
901 ggttgttctt ggagaattct taaaagaaat taagaagaac ccctccagtg tgaagtttgc
961 tgagatggcc aacatcctgg tgatccactg ccagacaaca gatgacctca tccagctgac
1021 agccatgtgc tggatgcggg agttcatcca gctggcgggc cgcgtcatgc tgccttactc
1081 ctccgggatc ctgactgctg tcttgccctg cttggcctac gatgaccgca agaaaagcat
1141 caaagaagtg gccaacgtgt gcaaccagag cctgatgaag ctggtcaccc ccgaggacga
1201 cgagctggat gagctgagac ctgggcagag gcaggcagag cccacccctg acgatgccct
1261 gccaaagcag gagggcacag ccagtggagg tccagatggt tcctgtgact ccagcttcag
1321 tagcggcatc agtgtcttca ctgcagccag cactgaaaga gccccagtga cccttcacct
1381 cgacgggatc gtgcaggtcc taaactgcca cctcagtgac acggccattg ggatgatgac
1441 caggattgca gttctcaagt ggctctacca cctctacatc aaaactcctc ggaagatgtt
1501 ccggcacacg gacagcctct ttcccatcct actgcagacg ttatcggatg aatcggatga
1561 ggtgatcctg aaggacctgg aggtgctggc agaaatcgct tcctcccccg caggccagac
1621 ggatgaccca ggccccctcg atggccctga cctccaggcc agccactcag agctccaggt
1681 gcccacccct ggcagagccg gcctactgaa cacctctggt accaaaggct tagaatgttc
1741 tccttcaact cccaccatga attcttactt ttataagttc atgatcaacc ttctcaagag
1801 attcagcagc gaacggaagc tcctggaggt cagaggccct ttcatcatca ggcagctgtg
1861 cctcctgctg aatgcggaga acatcttcca ctcaatggca gacatcctgc tgcgggagga
1921 ggacctcaag ttcgcctcga ccatggtcca cgccctcaac accatcctgc tgacctccac
1981 agagctcttc cagctaagga accagctgaa ggacctgaag accctggaga gccagaacct
2041 gttctgctgc ctgtaccgct cctggtgcca caacccagtc accacggtgt ccctctgctt
2101 cctcacccag aactaccggc acgcctatga cctcatccag aagtttgggg acctggaggt
2161 caccgtggac ttcctcgcag aggtggacaa gctggtgcag ctgattgagt gccccatctt
2221 cacatatctg cgcctgcagc tgctggacgt gaagaacaac ccctacctga tcaaggccct
2281 ctacggcctg ctcatgctcc tgcctcagag cagcgccttc cagctgctct cgcaccggct
2341 ccagtgcgtg cccaaccctg agctgctgca gaccgaagac agtctaaagg cagcccccaa
2401 gtcccagaaa gctgactccc ctagcatcga ctacgcagag ctgctgcagc actttgagaa
2461 ggtccagaac aagcacctgg aagtgcggca ccagcggagc gggcgtgggg accacctgga
2521 ccggagggtt gtcctctgac aggcctggca cggaggaggg cccaccgagt ggtcccatga
2581 aacactaagg gtcgtcacgc cctcccgagg agctcaagga cctgcctgtc aggaccaggg
2641 ctgggcctgc caacccaggg cagtgttggg gccggaggct gctgtgtctg cccaagctcc
2701 tctcagagtc cagtccccag gcctccagcg ctgtcagctg caccctggca ttctc
//