LOCUS BC125085 2181 bp mRNA linear HUM 04-OCT-2006
DEFINITION Homo sapiens transcription factor 4, mRNA (cDNA clone MGC:149724
IMAGE:40117798), complete cds.
ACCESSION BC125085
VERSION BC125085.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2181)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2181)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-OCT-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 27 Row: j Column: 20.
FEATURES Location/Qualifiers
source 1..2181
/db_xref="H-InvDB:HIT000388538"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:149724 IMAGE:40117798"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_283"
/note="Vector: pCR-Blunt II-TOPO with reversed insert;
Clone identification sequence tag: TACTCC sequenced from
the reverse primer"
gene 1..2181
/gene="TCF4"
/gene_synonym="E2-2"
/gene_synonym="ITF2"
/gene_synonym="SEF2"
/gene_synonym="SEF2-1"
/gene_synonym="SEF2-1A"
/gene_synonym="SEF2-1B"
/db_xref="GeneID:6925"
/db_xref="HGNC:HGNC:11634"
/db_xref="MIM:602272"
CDS 27..2030
/gene="TCF4"
/gene_synonym="E2-2"
/gene_synonym="ITF2"
/gene_synonym="SEF2"
/gene_synonym="SEF2-1"
/gene_synonym="SEF2-1A"
/gene_synonym="SEF2-1B"
/codon_start=1
/product="transcription factor 4"
/protein_id="AAI25086.1"
/db_xref="GeneID:6925"
/db_xref="HGNC:HGNC:11634"
/db_xref="MIM:602272"
/translation="MHHQQRMAALGTDKELSDLLDFSAMFSPPVSSGKNGPTSLASGH
FTGSNVEDRSSSGSWGNGGHPSPSRNYGDGTPYDHMTSRDLGSHDNLSPPFVNSRIQS
KTERGSYSSYGRESNLQGCHQQSLLGGDMDMGNPGTLSPTKPGSQYYQYSSNNPRRRP
LHSSAMEVQTKKVRKVPPGLPSSVYAPSASTADYNRDSPGYPSSKPATSTFPSSFFMQ
DGHHSSDPWSSSSGMNQPGYAGMLGNSSHIPQSSSYCSLHPHERLSYPSHSSADINSS
LPPMSTFHRSGTNHYSTSSCTPPANGTDSIMANRGSGAAGSSQTGDALGKALASIYSP
DHTNNSFSSNPSTPVGSPPSLSAGTAVWSRNGGQASSSPNYEGPLHSLQSRIEDRLER
LDDAIHVLRNHAVGPSTAMPGGHGDMHGIIGPSHNGAMGGLGSGYGTGLLSANRHSLM
VGTHREDGVALRGSHSLLPNQVPVPQLPVQSATSPDLNPPQDPYRGMPPGLQGQSVSS
GSSEIKSDDEGDENLQDTKSSEDKKLDDDKKDIKSITSNNDDEDLTPEQKAEREKERR
MANNARERLRVRDINEAFKELGRMVQLHLKSDKPQTKLLILHQAVAVILSLEQQVRER
NLNPKAACLKRREEEKVSSEPPPLSLAGPHPGMGDASNHMGQM"
BASE COUNT 589 a 588 c 522 g 482 t
ORIGIN
1 cgggcggttt gtgtgatttt gctaaaatgc atcaccaaca gcgaatggct gccttaggga
61 cggacaaaga gctgagtgat ttactggatt tcagtgcgat gttttcacct cctgtgagca
121 gtgggaaaaa tggaccaact tctttggcaa gtggacattt tactggctca aatgtagaag
181 acagaagtag ctcagggtcc tgggggaatg gaggacatcc aagcccgtcc aggaactatg
241 gagatgggac tccctatgac cacatgacca gcagggacct tgggtcacat gacaatctct
301 ctccaccttt tgtcaattcc agaatacaaa gtaaaacaga aaggggctca tactcatctt
361 atgggagaga atcaaactta cagggttgcc accagcagag tctccttgga ggtgacatgg
421 atatgggcaa cccaggaacc ctttcgccca ccaaacctgg ttcccagtac tatcagtatt
481 ctagcaataa tccccgaagg aggcctcttc acagtagtgc catggaggta cagacaaaga
541 aagttcgaaa agttcctcca ggtttgccat cttcagtcta tgctccatca gcaagcactg
601 ccgactacaa tagggactcg ccaggctatc cttcctccaa accagcaacc agcactttcc
661 ctagctcctt cttcatgcaa gatggccatc acagcagtga cccttggagc tcctccagtg
721 ggatgaatca gcctggctat gcaggaatgt tgggcaactc ttctcatatt ccacagtcca
781 gcagctactg tagcctgcat ccacatgaac gtttgagcta tccatcacac tcctcagcag
841 acatcaattc cagtcttcct ccgatgtcca ctttccatcg tagtggtaca aaccattaca
901 gcacctcttc ctgtacgcct cctgccaacg ggacagacag tataatggca aatagaggaa
961 gcggggcagc cggcagctcc cagactggag atgctctggg gaaagcactt gcttcgatct
1021 attctccaga tcacactaac aacagctttt catcaaaccc ttcaactcct gttggctctc
1081 ctccatctct ctcagcaggc acagctgttt ggtctagaaa tggaggacag gcctcatcgt
1141 ctcctaatta tgaaggaccc ttacactctt tgcaaagccg aattgaagat cgtttagaaa
1201 gactggatga tgctattcat gttctccgga accatgcagt gggcccatcc acagctatgc
1261 ctggtggtca tggggacatg catggaatca ttggaccttc tcataatgga gccatgggtg
1321 gtctgggctc agggtatgga accggccttc tttcagccaa cagacattca ctcatggtgg
1381 ggacccatcg tgaagatggc gtggccctga gaggcagcca ttctcttctg ccaaaccagg
1441 ttccggttcc acagcttcct gtccagtctg cgacttcccc tgacctgaac ccaccccagg
1501 acccttacag aggcatgcca ccaggactac aggggcagag tgtctcctct ggcagctctg
1561 agatcaaatc cgatgacgag ggtgatgaga acctgcaaga cacgaaatct tcggaggaca
1621 agaaattaga tgacgacaag aaggatatca aatcaattac tagcaataat gacgatgagg
1681 acctgacacc agagcagaag gcagagcgtg agaaggagcg gaggatggcc aacaatgccc
1741 gagagcgtct gcgggtccgt gacatcaacg aggctttcaa agagctcggc cgcatggtgc
1801 agctccacct caagagtgac aagccccaga ccaagctcct gatcctccac caggcggtgg
1861 ccgtcatcct cagtctggag cagcaagtcc gagaaaggaa tctgaatccg aaagctgcgt
1921 gtctgaaaag aagggaggaa gagaaggtgt cctcagagcc tccccctctc tccttggccg
1981 gcccacaccc tggaatggga gacgcatcga atcacatggg acagatgtaa aagggtccaa
2041 gttgccacat tgcttcatta aaacaagaga ccacttcctt aacagctgta ttatcttaaa
2101 cccacataaa cacttctcct taacccccat ttttgtaata taagacaagt ctgagtagtt
2161 atgaatcgca gacgcaagag g
//