LOCUS BC125047 1352 bp mRNA linear HUM 19-MAR-2007
DEFINITION Homo sapiens G protein-coupled receptor 39, mRNA (cDNA clone
IMAGE:40116108), partial cds.
ACCESSION BC125047
VERSION BC125047.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1352)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1352)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-OCT-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 27 Row: c Column: 12.
FEATURES Location/Qualifiers
source 1..1352
/db_xref="H-InvDB:HIT000388500"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:40116108"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_282"
/note="Vector: pCR-Blunt II-TOPO; Clone identification
sequence tag: AGTTCCT sequenced from the reverse primer"
gene <1..1352
/gene="GPR39"
/db_xref="GeneID:2863"
/db_xref="HGNC:HGNC:4496"
/db_xref="MIM:602886"
CDS <1..1351
/gene="GPR39"
/codon_start=2
/product="GPR39 protein"
/protein_id="AAI25048.1"
/db_xref="GeneID:2863"
/db_xref="HGNC:HGNC:4496"
/db_xref="MIM:602886"
/translation="SLPGSDCSQIIDHSHVPEFEVATWIKITLILVYLIIFVMGLLGN
SATIRVTQVLQKKGYLQKEVTDHMVSLACSDILVFLIGMPMEFYSIIWNPLTTSSYTL
SCKLHTFLFEACSYATLLHVLTLSFERYIAICHPFRYKAVSGPCQVKLLIGFVWVTSA
LVALPLLFAMGTEYPLVNVPSHRGLTCNRSSTRHHEQPETSNMSICTNLSSRWTVFQS
SIFGAFVVYLVVLLSVAFMCWNMMQVLMKSQKGSLAGGTRPPQLRKSESEESRTARRQ
TIIFLRLIVVTLAVCWMPNQIRRIMAAAKPKHDWTRSYFRAYMILLPFSETFFYLSSV
INPLLYTVSSQQFRRVFVQVLCCRLSLQHANHEKRLRVHAHSTTDSARFVQRPLLFAS
RRQSSARRTEKIFLSTFQSEAEPQSKSQSLSLESLEPNSGAKPANSAAENGFQEHEV"
BASE COUNT 262 a 431 c 360 g 299 t
ORIGIN
1 cagcctcccg ggcagtgact gctcccaaat cattgatcac agtcatgtcc ccgagtttga
61 ggtggccacc tggatcaaaa tcacccttat tctggtgtac ctgatcatct tcgtgatggg
121 ccttctgggg aacagcgcca ccattcgggt cacccaggtg ctgcagaaga aaggatactt
181 gcagaaggag gtgacagacc acatggtgag tttggcttgc tcggacatct tggtgttcct
241 catcggcatg cccatggagt tctacagcat catctggaat cccctgacca cgtccagcta
301 caccctgtcc tgcaagctgc acactttcct cttcgaggcc tgcagctacg ctacgctgct
361 gcacgtgctg acactcagct ttgagcgcta catcgccatc tgtcacccct tcaggtacaa
421 ggctgtgtcg ggaccttgcc aggtgaagct gctgattggc ttcgtctggg tcacctccgc
481 cctggtggca ctgcccttgc tgtttgccat gggtactgag taccccctgg tgaacgtgcc
541 cagccaccgg ggtctcactt gcaaccgctc cagcacccgc caccacgagc agcccgagac
601 ctccaatatg tccatctgta ccaacctctc cagccgctgg accgtgttcc agtccagcat
661 cttcggcgcc ttcgtggtct acctcgtggt cctgctctcc gtagccttca tgtgctggaa
721 catgatgcag gtgctcatga aaagccagaa gggctcgctg gccgggggca cgcggcctcc
781 gcagctgagg aagtccgaga gcgaagagag caggaccgcc aggaggcaga ccatcatctt
841 cctgaggctg attgttgtga cattggccgt atgctggatg cccaaccaga ttcggaggat
901 catggctgcg gccaaaccca agcacgactg gacgaggtcc tacttccggg cgtacatgat
961 cctcctcccc ttctcggaga cgtttttcta cctcagctcg gtcatcaacc cgctcctgta
1021 cacggtgtcc tcgcagcagt ttcggcgggt gttcgtgcag gtgctgtgct gccgcctgtc
1081 gctgcagcac gccaaccacg agaagcgcct gcgcgtacat gcgcactcca ccaccgacag
1141 cgcccgcttt gtgcagcgcc cgttgctctt cgcgtcccgg cgccagtcct ctgcaaggag
1201 aactgagaag attttcttaa gcacttttca gagcgaggcc gagccccagt ctaagtccca
1261 gtcattgagt ctcgagtcac tagagcccaa ctcaggcgcg aaaccagcca attctgctgc
1321 agagaatggt tttcaggagc atgaagtttg aa
//